甘蔗内生菌aurantica PB-St2的全基因组序列，一种对植物病原菌镰刀状炭疽菌具有抗真菌活性的抑病细菌。
Complete Genome Sequence of the Sugar Cane Endophyte Pseudomonas aurantiaca PB-St2, a Disease-Suppressive Bacterium with Antifungal Activity toward the Plant Pathogen Colletotrichum falcatum.
作者信息
Mehnaz Samina, Bauer Judith S, Gross Harald
机构信息
Department of Biological Sciences, Forman Christian College University, Lahore, Pakistan.
出版信息
Genome Announc. 2014 Jan 23;2(1):e01108-13. doi: 10.1128/genomeA.01108-13.
Abstract
The endophytic bacterium Pseudomonas aurantiaca PB-St2 exhibits antifungal activity and represents a biocontrol agent to suppress red rot disease of sugar cane. Here, we report the completely sequenced 6.6-Mb genome of P. aurantiaca PB-St2. The sequence contains a repertoire of biosynthetic genes for secondary metabolites that putatively contribute to its antagonistic activity and its plant-microbe interactions.
摘要
内生细菌橙色假单胞菌PB-St2具有抗真菌活性，是一种抑制甘蔗赤腐病的生防菌。在此，我们报道了橙色假单胞菌PB-St2的6.6 Mb全基因组序列。该序列包含一系列次生代谢物的生物合成基因，这些基因可能有助于其拮抗活性及其与植物的微生物相互作用。
相似文献
1
Complete Genome Sequence of the Sugar Cane Endophyte Pseudomonas aurantiaca PB-St2, a Disease-Suppressive Bacterium with Antifungal Activity toward the Plant Pathogen Colletotrichum falcatum.
Genome Announc. 2014 Jan 23;2(1):e01108-13. doi: 10.1128/genomeA.01108-13.
2
Complete Genome Sequence of the Sugar Beet Endophyte Pseudomonas poae RE*1-1-14, a Disease-Suppressive Bacterium.
Genome Announc. 2013 Mar 7;1(2):e0002013. doi: 10.1128/genomeA.00020-13.
3
Characterization of a phenazine and hexanoyl homoserine lactone producing Pseudomonas aurantiaca strain PB-St2, isolated from sugarcane stem.
J Microbiol Biotechnol. 2009 Dec;19(12):1688-94. doi: 10.4014/jmb.0904.04022.
4
The Systematic Investigation of the Quorum Sensing System of the Biocontrol Strain Pseudomonas chlororaphis subsp. aurantiaca PB-St2 Unveils aurI to Be a Biosynthetic Origin for 3-Oxo-Homoserine Lactones.
PLoS One. 2016 Nov 18;11(11):e0167002. doi: 10.1371/journal.pone.0167002. eCollection 2016.
5
Secondary Metabolites Production and Plant Growth Promotion by and Strains Isolated from Cactus, Cotton, and Para Grass.
J Microbiol Biotechnol. 2017 Mar 28;27(3):480-491. doi: 10.4014/jmb.1601.01021.
6
Antifungal properties of rhamnolipid produced by Pseudomonas aeruginosa DS9 against Colletotrichum falcatum.
J Basic Microbiol. 2015 Nov;55(11):1265-74. doi: 10.1002/jobm.201500220. Epub 2015 Jul 15.
7
A highly contiguous reference genome assembly for pathotype 08 causing red rot disease in sugarcane.
3 Biotech. 2021 Mar;11(3):148. doi: 10.1007/s13205-021-02695-x. Epub 2021 Feb 27.
8
Bioinspired green synthesis of silver nanoparticles by using a native Bacillus sp. strain AW1-2: Characterization and antifungal activity against Colletotrichum falcatum Went.
Enzyme Microb Technol. 2021 Mar;144:109745. doi: 10.1016/j.enzmictec.2021.109745. Epub 2021 Jan 11.
9
Draft Genome Sequence of Colletotrichum falcatum - A Prelude on Screening of Red Rot Pathogen in Sugarcane.
J Genomics. 2016 Jan 30;4:1-3. doi: 10.7150/jgen.13585. eCollection 2016.
10
Whole Genome Analysis of Sugarcane Root-Associated Endophyte B18-A Plant Growth-Promoting Bacterium With Antagonistic Potential Against .
Front Microbiol. 2021 Feb 5;12:628376. doi: 10.3389/fmicb.2021.628376. eCollection 2021.
引用本文的文献
1
Molecular and functional analysis of a putative pyocin S9, with endonuclease activity from P. chlororaphis subsp aurantiaca PB-St2.
Arch Microbiol. 2025 May 8;207(6):138. doi: 10.1007/s00203-025-04345-9.
2
Assessment of Anticancer and Antimicrobial Potential of Bioactive Metabolites and Optimization of Culture Conditions of PB-St2 for High Yields.
J Microbiol Biotechnol. 2025 Feb 14;35:e2311041. doi: 10.4014/jmb.2311.11041.
3
Genome mining of spp. hints towards the production of under-pitched secondary metabolites.
3 Biotech. 2023 Jun;13(6):182. doi: 10.1007/s13205-023-03607-x. Epub 2023 May 12.
4
Mitigation of virulence by signal inactivation.
Sci Adv. 2021 Sep 10;7(37):eabg2293. doi: 10.1126/sciadv.abg2293. Epub 2021 Sep 8.
5
Profiling of antimicrobial metabolites of plant growth promoting spp. isolated from different plant hosts.
3 Biotech. 2021 Feb;11(2):48. doi: 10.1007/s13205-020-02585-8. Epub 2021 Jan 11.
6
Linking Comparative Genomics of Nine Potato-Associated Isolates With Their Differing Biocontrol Potential Against Late Blight.
Front Microbiol. 2020 Apr 30;11:857. doi: 10.3389/fmicb.2020.00857. eCollection 2020.
7
Draft Genome Sequence of Pseudomonas chlororaphis subsp. ARS-38, a Bacterial Strain with Plant Growth Promotion Potential, Isolated from the Rhizosphere of Cotton in Pakistan.
Microbiol Resour Announc. 2020 Jan 16;9(3):e01398-19. doi: 10.1128/MRA.01398-19.
8
Molecular identification and biocontrol activity of sugarcane rhizosphere bacteria against red rot pathogen .
Biotechnol Rep (Amst). 2019 Feb 15;21:e00317. doi: 10.1016/j.btre.2019.e00317. eCollection 2019 Mar.
9
A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies.
Front Microbiol. 2017 Jul 18;8:1272. doi: 10.3389/fmicb.2017.01272. eCollection 2017.
10
The Systematic Investigation of the Quorum Sensing System of the Biocontrol Strain Pseudomonas chlororaphis subsp. aurantiaca PB-St2 Unveils aurI to Be a Biosynthetic Origin for 3-Oxo-Homoserine Lactones.
PLoS One. 2016 Nov 18;11(11):e0167002. doi: 10.1371/journal.pone.0167002. eCollection 2016.
本文引用的文献
1
Lahorenoic acids A-C, ortho-dialkyl-substituted aromatic acids from the biocontrol strain Pseudomonas aurantiaca PB-St2.
J Nat Prod. 2013 Feb 22;76(2):135-41. doi: 10.1021/np3005166. Epub 2013 Feb 12.
2
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.
BMC Bioinformatics. 2012 Sep 19;13:238. doi: 10.1186/1471-2105-13-238.
3
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.
PLoS Genet. 2012 Jul;8(7):e1002784. doi: 10.1371/journal.pgen.1002784. Epub 2012 Jul 5.
4
The mbo operon is specific and essential for biosynthesis of mangotoxin in Pseudomonas syringae.
PLoS One. 2012;7(5):e36709. doi: 10.1371/journal.pone.0036709. Epub 2012 May 17.
5
Genetic and functional characterization of cyclic lipopeptide white-line-inducing principle (WLIP) production by rice rhizosphere isolate Pseudomonas putida RW10S2.
Appl Environ Microbiol. 2012 Jul;78(14):4826-34. doi: 10.1128/AEM.00335-12. Epub 2012 Apr 27.
6
Genome sequence of Pseudomonas chlororaphis GP72, a root-colonizing biocontrol strain.
J Bacteriol. 2012 Mar;194(5):1269-70. doi: 10.1128/JB.06713-11.
7
Genetic and phenotypic diversity of plant growth promoting rhizobacteria isolated from sugarcane plants growing in pakistan.
J Microbiol Biotechnol. 2010 Dec;20(12):1614-23. doi: 10.4014/jmb.1005.05014.
8
Scaffolding pre-assembled contigs using SSPACE.
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
9
Enhanced production of 2-hydroxyphenazine in Pseudomonas chlororaphis GP72.
Appl Microbiol Biotechnol. 2011 Jan;89(1):169-77. doi: 10.1007/s00253-010-2863-1. Epub 2010 Sep 21.
10
A secondary metabolite acting as a signalling molecule controls Pseudomonas entomophila virulence.
Cell Microbiol. 2010 Nov;12(11):1666-79. doi: 10.1111/j.1462-5822.2010.01501.x. Epub 2010 Aug 17.
Zotero 插件