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生物膜实验的最少信息(MIABiE):关于生活在界面处的固着微生物群落的实验和数据报告标准

Minimum information about a biofilm experiment (MIABiE): standards for reporting experiments and data on sessile microbial communities living at interfaces.

作者信息

Lourenço Anália, Coenye Tom, Goeres Darla M, Donelli Gianfranco, Azevedo Andreia S, Ceri Howard, Coelho Filipa L, Flemming Hans-Curt, Juhna Talis, Lopes Susana P, Oliveira Rosário, Oliver Antonio, Shirtliff Mark E, Sousa Ana M, Stoodley Paul, Pereira Maria Olivia, Azevedo Nuno F

机构信息

Departamento de Informática, Universidade de Vigo, ESEI - Escuela Superior de Ingeniería Informática, Ourense, Spain; IBB - Institute for Biotechnology and Bioengineering, Centre of Biological Engineering, University of Minho, Braga, Portugal.

出版信息

Pathog Dis. 2014 Apr;70(3):250-6. doi: 10.1111/2049-632X.12146. Epub 2014 Feb 24.

Abstract

The minimum information about a biofilm experiment (MIABiE) initiative has arisen from the need to find an adequate and scientifically sound way to control the quality of the documentation accompanying the public deposition of biofilm-related data, particularly those obtained using high-throughput devices and techniques. Thereby, the MIABiE consortium has initiated the identification and organization of a set of modules containing the minimum information that needs to be reported to guarantee the interpretability and independent verification of experimental results and their integration with knowledge coming from other fields. MIABiE does not intend to propose specific standards on how biofilms experiments should be performed, because it is acknowledged that specific research questions require specific conditions which may deviate from any standardization. Instead, MIABiE presents guidelines about the data to be recorded and published in order for the procedure and results to be easily and unequivocally interpreted and reproduced. Overall, MIABiE opens up the discussion about a number of particular areas of interest and attempts to achieve a broad consensus about which biofilm data and metadata should be reported in scientific journals in a systematic, rigorous and understandable manner.

摘要

生物膜实验最小信息(MIABiE)计划源于这样一种需求,即需要找到一种充分且科学合理的方法,来把控伴随生物膜相关数据公开存档的文档质量,尤其是那些使用高通量设备和技术获得的数据。因此,MIABiE联盟已着手识别和组织一组模块,这些模块包含为确保实验结果的可解释性、独立验证以及与其他领域知识整合而需要报告的最小信息。MIABiE并不打算就生物膜实验应如何开展提出具体标准,因为人们认识到特定的研究问题需要特定条件,这些条件可能偏离任何标准化。相反,MIABiE给出了关于要记录和发表的数据的指导方针,以便实验过程和结果能够轻松且明确地被解释和重现。总体而言,MIABiE开启了关于一些特定感兴趣领域的讨论,并试图就哪些生物膜数据和元数据应以系统、严谨且易懂的方式在科学期刊上报告达成广泛共识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d95c/4406403/5e9ad1296140/nihms681143f1.jpg

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本文引用的文献

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Database resources of the National Center for Biotechnology Information.国家生物技术信息中心数据库资源。
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2
Comparability and reproducibility of biomedical data.生物医学数据的可比性和可重复性。
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3
Gene Ontology annotations and resources.基因本体论注释和资源。
Nucleic Acids Res. 2013 Jan;41(Database issue):D530-5. doi: 10.1093/nar/gks1050. Epub 2012 Nov 17.
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KEGG for integration and interpretation of large-scale molecular data sets.KEGG 用于整合和解释大规模分子数据集。
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