Biobased and Other Animal Co-Products Research Unit, Eastern Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, USA.
Molecular Characterization of Foodborne Pathogens Research Unit, Eastern Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, USA.
Gene. 2014 Apr 25;540(1):46-53. doi: 10.1016/j.gene.2014.02.029. Epub 2014 Feb 22.
Candida bombicola is well-studied for the production of a biosurfactant, the sophorolipids. In this paper, the cloning of a glucosyltransferase gene using polymerase-chain-reaction (PCR) technique is described. Degenerative primer-pairs were first designed based on the highly conserved amino-acid sequences of several selected yeast glucosyltransferases. Using these primers, an amplified sequence (amplicon) of 700 base-pair from C. bombicola was obtained and subsequently sequenced. Based on the sequence of this amplicon, additional target-specific PCR primers were designed for use in subsequent rounds of 3'- and 5'-extension using DNA walking technique to eventually obtain a C. bombicola genomic sequence containing an open-reading-frame putatively identified as a glucosyltransferase (gtf-1). The gene was subcloned in Saccharomyces cerevisiae for expression and functional characterization. Quantitative RT-PCR confirmed the expression of gtf-1 in the recombinant S. cerevisiae. In vitro assay with the sonicated cells of the recombinant yeast confirms the presence of glucosylation activity on sterol and hydroxy fatty acid substrates. This study reports for the first time the cloning and characterization of a broad-specificity lipid glucosylation gene from C. bombicola, and the functional activity of its gene product.
毕赤酵母是研究生物表面活性剂——槐糖脂的良好模型。本文描述了使用聚合酶链反应(PCR)技术克隆葡糖基转移酶基因的方法。首先根据几种已选酵母葡糖基转移酶的高度保守氨基酸序列设计简并性引物对。使用这些引物,从 C. bombicola 中扩增得到了 700bp 的序列(扩增子),并对其进行了测序。根据该扩增子的序列,设计了额外的靶特异性 PCR 引物,用于随后的 3' 和 5' 延伸,使用 DNA 步行技术最终获得了一个包含开放阅读框的毕赤酵母基因组序列,该序列推测为葡糖基转移酶(gtf-1)。将该基因亚克隆到酿酒酵母中进行表达和功能表征。定量 RT-PCR 证实了重组酿酒酵母中 gtf-1 的表达。重组酵母超声细胞的体外测定证实了固醇和羟基脂肪酸底物上存在葡糖基化活性。本研究首次报道了从 Candida bombicola 中克隆和表征了一种具有广泛特异性的脂类葡糖基化基因,以及其基因产物的功能活性。