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秀丽隐杆线虫胚胎微分干涉差显微镜图像中首个有丝分裂纺锤体的自动分割。

Automated segmentation of the first mitotic spindle in differential interference contrast microcopy images of C. elegans embryos.

作者信息

Farhadifar Reza, Needleman Daniel

机构信息

Department of Applied Physics, Center for Systems Biology, Harvard University, Northwest Labs, 52 Oxford Street, Room 359.20, Cambridge, MA, 02138, USA,

出版信息

Methods Mol Biol. 2014;1136:41-5. doi: 10.1007/978-1-4939-0329-0_3.

Abstract

Differential interference contrast (DIC) microscopy is a non-fluorescent microscopy technique that is commonly used to visualize the first mitotic spindle in C. elegans embryos. DIC movies are easy to acquire and provide data with high spatial and temporal resolution, allowing detailed investigations of the dynamics of the spindle-which elongates, oscillates, and is positioned asymmetrically. Despite the immense amount of information such movies provide, they are normally only used to draw qualitative conclusion based on manual inspection. We have developed an algorithm to automatically segment the mitotic spindle in DIC movies of C. elegans embryos, determine the position of centrosomes, quantify the morphology and motions of the spindle, and track these features over time. This method should be widely useful for studying the first mitotic spindle in C. elegans.

摘要

微分干涉差(DIC)显微镜术是一种非荧光显微镜技术,常用于观察秀丽隐杆线虫胚胎中的首个有丝分裂纺锤体。DIC 电影很容易获取,并能提供具有高空间和时间分辨率的数据,从而能够详细研究纺锤体的动态变化——纺锤体会伸长、振荡并不对称定位。尽管这类电影提供了大量信息,但通常仅用于基于人工检查得出定性结论。我们开发了一种算法,可自动分割秀丽隐杆线虫胚胎 DIC 电影中的有丝分裂纺锤体,确定中心体的位置,量化纺锤体的形态和运动,并随时间跟踪这些特征。该方法对于研究秀丽隐杆线虫中的首个有丝分裂纺锤体应该具有广泛的用途。

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