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根瘤菌质粒 pLPU83a 能够根据其基因组背景在不同的转移机制之间切换。

Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background.

机构信息

Programa de Ingeniería Genómica, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México; Instituto de Biotecnología y Biología Molecular, CCT-La Plata-CONICET, Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, Argentina.

出版信息

FEMS Microbiol Ecol. 2014 Jun;88(3):565-78. doi: 10.1111/1574-6941.12325. Epub 2014 Apr 7.

DOI:10.1111/1574-6941.12325
PMID:24646299
Abstract

Plasmids have played a major role in bacterial evolution, mainly by their capacity to perform horizontal gene transfer (HGT). Their conjugative transfer (CT) properties are usually described in terms of the plasmid itself. In this work, we analyzed structural and functional aspects of the CT of pLPU83a, an accessory replicon from Rhizobium sp. LPU83, able to transfer from its parental strain, from Ensifer meliloti, or from Rhizobium etli. pLPU83a contains a complete set of transfer genes, featuring a particular organization, shared with only two other rhizobial plasmids. These plasmids contain a TraR quorum-sensing (QS) transcriptional regulator, but lack an acyl-homoserine lactone (AHL) synthase gene. We also determined that the ability of pLPU83a to transfer from R. etli CFN42 genomic background was mainly achieved through mobilization, employing the machinery of the endogenous plasmid pRetCFN42a, falling under control of the QS regulators from pRetCFN42a. In contrast, from its native or from the E. meliloti background, pLPU83a utilized its own machinery for conjugation, requiring the plasmid-encoded traR. Activation of TraR seemed to be AHL independent. The results obtained indicate that the CT phenotype of a plasmid is dictated not only by the genes it carries, but by their interaction with its genomic context.

摘要

质粒在细菌进化中发挥了重要作用,主要通过其进行水平基因转移 (HGT) 的能力。它们的接合转移 (CT) 特性通常根据质粒本身来描述。在这项工作中,我们分析了 Rhizobium sp. LPU83 辅助复制子 pLPU83a 的 CT 的结构和功能方面,该质粒能够从其亲本菌株、从 Ensifer meliloti 或从 Rhizobium etli 中转移。pLPU83a 包含一套完整的转移基因,具有特定的组织,仅与另外两个根瘤菌质粒共享。这些质粒包含一个 TraR 群体感应 (QS) 转录调节因子,但缺乏酰基高丝氨酸内酯 (AHL) 合成酶基因。我们还确定,pLPU83a 从 R. etli CFN42 基因组背景中转移的能力主要是通过动员实现的,利用内源质粒 pRetCFN42a 的机制,受 pRetCFN42a 的 QS 调节剂控制。相比之下,从其天然或从 E. meliloti 背景中,pLPU83a 利用其自身的共轭机制,需要质粒编码的 traR。TraR 的激活似乎不依赖于 AHL。所得结果表明,质粒的 CT 表型不仅由其携带的基因决定,还与其与基因组背景的相互作用有关。

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