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摆动鸟嘌呤·胸腺嘧啶DNA碱基错配的DPT互变异构不是致突变的:量子力学和量子拓扑原子理论的观点

DPT tautomerisation of the wobble guanine·thymine DNA base mispair is not mutagenic: QM and QTAIM arguments.

作者信息

Brovarets' Ol'ha O, Zhurakivsky Roman O, Hovorun Dmytro M

机构信息

a Department of Molecular and Quantum Biophysics , Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine , 150 Akademika Zabolotnoho Str., 03680 Kyiv , Ukraine.

出版信息

J Biomol Struct Dyn. 2015;33(3):674-89. doi: 10.1080/07391102.2014.897259. Epub 2014 Mar 21.

Abstract

We have shown for the first time, connecting QM methods with QTAIM analysis and using the methodology of the sweeps of the energetical, electron-topological and geometrical parameters, that the tautomerisation of the wobble guanine·thymine (wG·T) DNA base mispair into the wG()·T() base mispair induced by the double proton transfer (DPT), which undergoes a concerted asynchronous pathway, is not mutagenic. The wG·T → wG()·T() DPT tautomerisation does not result in the transition of the G base into its mutagenic tautomeric form G() able to mispair with the T base within the Watson-Crick base pairing scheme. This observation is explained by the so-called quantum protection of the wG·T DNA base mispair from its mutagenic tautomerisation - the dynamical non-stability of the tautomerised wG()·T() base mispair and significantly negative value of the Gibbs free energy of activation for the reverse reaction of the wG·T → wG()·T(*) DPT tautomerisation.

摘要

我们首次将量子力学方法与量子拓扑原子理论(QTAIM)分析相结合,并运用能量、电子拓扑和几何参数扫描方法,证明了摆动鸟嘌呤·胸腺嘧啶(wG·T)DNA碱基错配通过双质子转移(DPT)诱导转化为wG()·T()碱基错配的过程并非致突变过程,该过程遵循协同异步途径。wG·T → wG()·T() DPT互变异构化不会导致鸟嘌呤(G)碱基转变为其能在沃森-克里克碱基配对模式下与胸腺嘧啶(T)碱基错配的诱变互变异构形式G()。这一观察结果可通过所谓的wG·T DNA碱基错配免受诱变互变异构化的量子保护来解释,即互变异构化后的wG()·T()碱基错配具有动力学不稳定性,且wG·T → wG()·T(*) DPT互变异构化逆反应的吉布斯自由能活化值显著为负。

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