Silva Mónica A, Jonsen Ian, Russell Deborah J F, Prieto Rui, Thompson Dave, Baumgartner Mark F
Center of the Institute of Marine Research (IMAR) and Department of Oceanography and Fisheries, University of the Azores, Horta, Portugal; Laboratory of Robotics and Systems in Engineering and Science (LARSyS), Lisbon, Portugal; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America.
Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada.
PLoS One. 2014 Mar 20;9(3):e92277. doi: 10.1371/journal.pone.0092277. eCollection 2014.
Argos recently implemented a new algorithm to calculate locations of satellite-tracked animals that uses a Kalman filter (KF). The KF algorithm is reported to increase the number and accuracy of estimated positions over the traditional Least Squares (LS) algorithm, with potential advantages to the application of state-space methods to model animal movement data. We tested the performance of two Bayesian state-space models (SSMs) fitted to satellite tracking data processed with KF algorithm. Tracks from 7 harbour seals (Phoca vitulina) tagged with ARGOS satellite transmitters equipped with Fastloc GPS loggers were used to calculate the error of locations estimated from SSMs fitted to KF and LS data, by comparing those to "true" GPS locations. Data on 6 fin whales (Balaenoptera physalus) were used to investigate consistency in movement parameters, location and behavioural states estimated by switching state-space models (SSSM) fitted to data derived from KF and LS methods. The model fit to KF locations improved the accuracy of seal trips by 27% over the LS model. 82% of locations predicted from the KF model and 73% of locations from the LS model were <5 km from the corresponding interpolated GPS position. Uncertainty in KF model estimates (5.6 ± 5.6 km) was nearly half that of LS estimates (11.6 ± 8.4 km). Accuracy of KF and LS modelled locations was sensitive to precision but not to observation frequency or temporal resolution of raw Argos data. On average, 88% of whale locations estimated by KF models fell within the 95% probability ellipse of paired locations from LS models. Precision of KF locations for whales was generally higher. Whales' behavioural mode inferred by KF models matched the classification from LS models in 94% of the cases. State-space models fit to KF data can improve spatial accuracy of location estimates over LS models and produce equally reliable behavioural estimates.
阿戈斯公司最近实施了一种新算法,用于计算使用卡尔曼滤波器(KF)的卫星跟踪动物的位置。据报道,KF算法比传统的最小二乘法(LS)算法增加了估计位置的数量和准确性,这对于将状态空间方法应用于动物运动数据建模具有潜在优势。我们测试了两个贝叶斯状态空间模型(SSM)的性能,这些模型拟合了用KF算法处理的卫星跟踪数据。通过将来自配备Fastloc GPS记录仪的ARGOS卫星发射器标记的7只港海豹(Phoca vitulina)的轨迹与“真实”GPS位置进行比较,来计算从拟合到KF和LS数据的SSM估计的位置误差。使用6头长须鲸(Balaenoptera physalus)的数据来研究通过切换拟合来自KF和LS方法的数据的状态空间模型(SSSM)估计的运动参数、位置和行为状态的一致性。与LS模型相比,拟合到KF位置的模型将海豹行程的准确性提高了27%。KF模型预测的位置中有82%,LS模型预测的位置中有73%距离相应的插值GPS位置小于5公里。KF模型估计的不确定性(5.6±5.6公里)几乎是LS估计的一半(11.6±8.4公里)。KF和LS建模位置的准确性对精度敏感,但对原始阿戈斯数据的观测频率或时间分辨率不敏感。平均而言,KF模型估计的鲸鱼位置中有88%落在LS模型配对位置的95%概率椭圆内。鲸鱼的KF位置精度通常更高。KF模型推断的鲸鱼行为模式在94%的情况下与LS模型的分类相匹配。拟合到KF数据的状态空间模型可以比LS模型提高位置估计的空间准确性,并产生同样可靠的行为估计。