野生灵长类动物群体中两种猿猴出血热病毒的高遗传多样性和适应潜力。

High genetic diversity and adaptive potential of two simian hemorrhagic fever viruses in a wild primate population.

作者信息

Bailey Adam L, Lauck Michael, Weiler Andrea, Sibley Samuel D, Dinis Jorge M, Bergman Zachary, Nelson Chase W, Correll Michael, Gleicher Michael, Hyeroba David, Tumukunde Alex, Weny Geoffrey, Chapman Colin, Kuhn Jens H, Hughes Austin L, Friedrich Thomas C, Goldberg Tony L, O'Connor David H

机构信息

Department of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, Wisconsin, United States of America; Wisconsin National Primate Research Center, Madison, Wisconsin, United States of America.

Wisconsin National Primate Research Center, Madison, Wisconsin, United States of America; Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

出版信息

PLoS One. 2014 Mar 20;9(3):e90714. doi: 10.1371/journal.pone.0090714. eCollection 2014.

Abstract

Key biological properties such as high genetic diversity and high evolutionary rate enhance the potential of certain RNA viruses to adapt and emerge. Identifying viruses with these properties in their natural hosts could dramatically improve disease forecasting and surveillance. Recently, we discovered two novel members of the viral family Arteriviridae: simian hemorrhagic fever virus (SHFV)-krc1 and SHFV-krc2, infecting a single wild red colobus (Procolobus rufomitratus tephrosceles) in Kibale National Park, Uganda. Nearly nothing is known about the biological properties of SHFVs in nature, although the SHFV type strain, SHFV-LVR, has caused devastating outbreaks of viral hemorrhagic fever in captive macaques. Here we detected SHFV-krc1 and SHFV-krc2 in 40% and 47% of 60 wild red colobus tested, respectively. We found viral loads in excess of 10(6)-10(7) RNA copies per milliliter of blood plasma for each of these viruses. SHFV-krc1 and SHFV-krc2 also showed high genetic diversity at both the inter- and intra-host levels. Analyses of synonymous and non-synonymous nucleotide diversity across viral genomes revealed patterns suggestive of positive selection in SHFV open reading frames (ORF) 5 (SHFV-krc2 only) and 7 (SHFV-krc1 and SHFV-krc2). Thus, these viruses share several important properties with some of the most rapidly evolving, emergent RNA viruses.

摘要

诸如高遗传多样性和高进化速率等关键生物学特性增强了某些RNA病毒适应和出现的潜力。在其自然宿主中识别具有这些特性的病毒可以显著改善疾病预测和监测。最近,我们发现了动脉炎病毒科的两个新成员:猿猴出血热病毒(SHFV)-krc1和SHFV-krc2,它们感染了乌干达基巴莱国家公园的一只野生红疣猴(Procolobus rufomitratus tephrosceles)。尽管SHFV原型株SHFV-LVR在圈养猕猴中引发了病毒性出血热的毁灭性疫情,但对于SHFVs在自然环境中的生物学特性几乎一无所知。在这里,我们在检测的60只野生红疣猴中,分别在40%和47%的个体中检测到了SHFV-krc1和SHFV-krc2。我们发现这两种病毒每毫升血浆中的病毒载量都超过了10(6)-10(7)个RNA拷贝。SHFV-krc1和SHFV-krc2在宿主间和宿主内水平上也都表现出高遗传多样性。对病毒基因组同义核苷酸多样性和非同义核苷酸多样性的分析揭示了一些模式,表明在SHFV开放阅读框(ORF)5(仅SHFV-krc2)和7(SHFV-krc1和SHFV-krc2)中存在正选择。因此,这些病毒与一些进化最快的新兴RNA病毒具有若干重要特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42e8/3961216/b4e703dcba8e/pone.0090714.g001.jpg

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