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MIRAGE:糖组学实验所需的最小信息。

MIRAGE: the minimum information required for a glycomics experiment.

作者信息

York William S, Agravat Sanjay, Aoki-Kinoshita Kiyoko F, McBride Ryan, Campbell Matthew P, Costello Catherine E, Dell Anne, Feizi Ten, Haslam Stuart M, Karlsson Niclas, Khoo Kay-Hooi, Kolarich Daniel, Liu Yan, Novotny Milos, Packer Nicolle H, Paulson James C, Rapp Erdmann, Ranzinger Rene, Rudd Pauline M, Smith David F, Struwe Weston B, Tiemeyer Michael, Wells Lance, Zaia Joseph, Kettner Carsten

机构信息

Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.

出版信息

Glycobiology. 2014 May;24(5):402-6. doi: 10.1093/glycob/cwu018. Epub 2014 Mar 20.

Abstract

The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data. These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies. The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases. As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al. 2013. The minimum information required for a glycomics experiment (MIRAGE) project - Improving the standards for reporting mass spectrometry-based glycoanalytic data. Mol. Cell Proteomics. 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research. In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.

摘要

糖组学实验所需最小信息(MIRAGE)计划于2011年11月在华盛顿州西雅图成立,旨在制定指南,以报告通过各种糖组学分析获得的定性和定量结果,包括用于制备用于分析的聚糖并生成原始数据的条件和技术,以及用于处理和注释此数据的工具和参数。这些指南必须解决广泛的问题,因为糖组学数据本质上很复杂,并且是使用多种方法生成的,包括质谱(MS)、色谱法、聚糖阵列结合测定、核磁共振(NMR)和其他快速发展的技术。从事聚糖具有重要作用的生物系统研究的科学家接受这些指南,将有助于评估和重现科学期刊上报道并上传到糖组学数据库的糖组学实验和数据。作为第一步,最近已发布了MS糖组分析的MIRAGE指南(Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., 等人。2013年。糖组学实验所需最小信息(MIRAGE)项目——提高基于质谱的糖组分析数据报告标准。《分子与细胞蛋白质组学》。12:991 - 995),使其能够在实际糖生物学研究的背景下得到实施和评估。在本文中,我们阐述了MIRAGE计划的历史背景、组织结构和总体目标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4d9/3976285/4ff65c540809/cwu01801.jpg

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