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聚糖的功能意义及其整理:在意大利帕多瓦举行的第 16 届国际生物整理会议研讨会上获得的认识。

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.

机构信息

Department of Biochemistry & Molecular Medicine, The George Washington University School of Medicine and Health Sciences, 2300 I St. NW, Washington, DC 20052, United States.

York Structural Biology Laboratory, Department of Chemistry, University of York, Wentworth Way, York YO10 5DD, United Kingdom.

出版信息

Database (Oxford). 2024 Aug 13;2024. doi: 10.1093/database/baae073.

DOI:10.1093/database/baae073
PMID:39137905
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11321244/
Abstract

Dynamic changes in protein glycosylation impact human health and disease progression. However, current resources that capture disease and phenotype information focus primarily on the macromolecules within the central dogma of molecular biology (DNA, RNA, proteins). To gain a better understanding of organisms, there is a need to capture the functional impact of glycans and glycosylation on biological processes. A workshop titled "Functional impact of glycans and their curation" was held in conjunction with the 16th Annual International Biocuration Conference to discuss ongoing worldwide activities related to glycan function curation. This workshop brought together subject matter experts, tool developers, and biocurators from over 20 projects and bioinformatics resources. Participants discussed four key topics for each of their resources: (i) how they curate glycan function-related data from publications and other sources, (ii) what type of data they would like to acquire, (iii) what data they currently have, and (iv) what standards they use. Their answers contributed input that provided a comprehensive overview of state-of-the-art glycan function curation and annotations. This report summarizes the outcome of discussions, including potential solutions and areas where curators, data wranglers, and text mining experts can collaborate to address current gaps in glycan and glycosylation annotations, leveraging each other's work to improve their respective resources and encourage impactful data sharing among resources. Database URL: https://wiki.glygen.org/Glycan_Function_Workshop_2023.

摘要

蛋白质糖基化的动态变化影响着人类健康和疾病进展。然而,当前捕捉疾病和表型信息的资源主要集中在分子生物学中心法则内的大分子(DNA、RNA、蛋白质)上。为了更好地了解生物体,有必要捕捉聚糖及其糖基化对生物过程的功能影响。题为“聚糖及其编目功能影响”的研讨会与第 16 届年度国际生物编目会议联合举办,旨在讨论与糖基化功能编目相关的全球正在进行的活动。该研讨会汇集了来自 20 多个项目和生物信息学资源的主题专家、工具开发人员和生物编目人员。与会者讨论了其各自资源的四个关键主题:(i)他们如何从出版物和其他来源编目与糖基化功能相关的数据,(ii)他们希望获取哪些类型的数据,(iii)他们目前拥有哪些数据,以及(iv)他们使用哪些标准。他们的回答提供了对糖基化功能编目和注释的最新状态的全面概述。本报告总结了讨论的结果,包括潜在的解决方案和编目人员、数据处理人员以及文本挖掘专家可以合作的领域,以解决糖基化和糖基化注释中的当前差距,利用彼此的工作来改进各自的资源,并鼓励资源之间有影响力的数据共享。数据库 URL:https://wiki.glygen.org/Glycan_Function_Workshop_2023。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/09b4/11321244/59152886154c/baae073f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/09b4/11321244/59152886154c/baae073f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/09b4/11321244/59152886154c/baae073f1.jpg

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