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经典动力蛋白DNM1和DNM3基因在正常人类中枢神经系统中表达量最高。

Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system.

作者信息

Romeu Antoni, Arola Lluís

机构信息

Nutrigenomics Research Group, Department of Biochemistry and Biotechnology, Rovira i Virgili University, Tarragona, Spain.

出版信息

BMC Res Notes. 2014 Mar 28;7:188. doi: 10.1186/1756-0500-7-188.

Abstract

Dynamin is a super-family of large GTPase proteins that polymerise during their biological activity. Dynamin polymers form around lipid tubes and contribute to the membrane fission and scission of nascent vesicles from parent membranes. Here we used the NCBI Gene Expression Omnibus (GEO) database and the BioGPS gene expression portal to study differential dynamin gene expression in normal human organs or tissues. From the GDS1096 and GDS596 dataset, we downloaded the relative expression levels of dynamin-related genes (presented as percentages), with respect to all of the other genes on the array (platform Affymetrix GPL96), which includes the best characterised human genes. The expression profiles of dynamin in the central nervous system (CNS) are clearly distinct from the expression profiles in the other organs or tissues studied. We found that the classical dynamin DNM1 and DNM3 genes reach their maximum expression levels (100% of maximal expression) in all normal human CNS tissues studied. This is in contrast to the expression profile in the other normal human organs or tissues studied, in which both dynamin DNM1 and DNM3 genes showed approximately 50% maximal expression. This data mining analysis supports the concept that there is a relationship between the synapse and the molecular function of dynamin, suggesting a new field of work in the study of neurodegenerative diseases.

摘要

发动蛋白是一类大型GTP酶蛋白的超家族,它们在生物活性过程中会聚合。发动蛋白聚合物在脂质管周围形成,并有助于新生囊泡从母膜上进行膜裂变和切断。在此,我们使用美国国家生物技术信息中心(NCBI)的基因表达综合数据库(GEO)和BioGPS基因表达门户来研究正常人体器官或组织中发动蛋白基因的差异表达。从GDS1096和GDS596数据集中,我们下载了发动蛋白相关基因相对于芯片上所有其他基因(平台为Affymetrix GPL96,其中包括特征最明确的人类基因)的相对表达水平(以百分比表示)。发动蛋白在中枢神经系统(CNS)中的表达谱与所研究的其他器官或组织中的表达谱明显不同。我们发现,经典的发动蛋白DNM1和DNM3基因在所研究的所有正常人体CNS组织中达到其最大表达水平(最大表达的100%)。这与所研究的其他正常人体器官或组织中的表达谱形成对比,在这些组织中,发动蛋白DNM1和DNM3基因均显示约50%的最大表达。这种数据挖掘分析支持了突触与发动蛋白分子功能之间存在关联的概念,这为神经退行性疾病的研究提出了一个新的工作领域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b99/3986822/8fd73df8314e/1756-0500-7-188-1.jpg

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