从煤矸石堆废水分离出的嗜酸性氧化硫硫杆菌A01的基因组草图序列
Draft Genome Sequence of the Extremophile Acidithiobacillus thiooxidans A01, Isolated from the Wastewater of a Coal Dump.
作者信息
Yin Huaqun, Zhang Xian, Liang Yili, Xiao Yunhua, Niu Jiaojiao, Liu Xueduan
机构信息
School of Minerals Processing and Bioengineering, Central South University, Changsha, China, and Key Laboratory of Biometallurgy, Ministry of Education, Central South University, Changsha, China.
出版信息
Genome Announc. 2014 Apr 3;2(2):e00222-14. doi: 10.1128/genomeA.00222-14.
Abstract
The draft genome of Acidithiobacillus thiooxidans A01 contains 3,820,158 bp, with a G+C content of 53.08% and 3,660 predicted coding sequences (CDSs). The bacterium contains a series of specific genes involved in the oxidation of elemental sulfur and reduced inorganic sulfur compounds (RISCs).
摘要
嗜酸氧化硫硫杆菌A01的基因组草图包含3,820,158个碱基对，G+C含量为53.08%，预测有3,660个编码序列（CDS）。该细菌包含一系列参与元素硫和还原态无机硫化合物（RISC）氧化的特定基因。
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2
De novo assembly of human genomes with massively parallel short read sequencing.利用大规模平行短读测序进行人类基因组从头组装。
Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.
3
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J Bacteriol. 2009 Sep;191(18):5877-8. doi: 10.1128/JB.00843-09. Epub 2009 Jul 17.
4
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
5
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
6
Oxidation of Elemental Sulfur to Sulfite by Thiobacillus thiooxidans Cells.元素硫被氧化为亚硫酸盐的过程。
Appl Environ Microbiol. 1992 Nov;58(11):3767-9. doi: 10.1128/aem.58.11.3767-3769.1992.
7
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Appl Microbiol Biotechnol. 2003 Dec;63(3):239-48. doi: 10.1007/s00253-003-1448-7. Epub 2003 Oct 18.
8
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Annu Rev Microbiol. 2002;56:65-91. doi: 10.1146/annurev.micro.56.012302.161052. Epub 2002 Jan 30.
9
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Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
10
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Biochim Biophys Acta. 1965 Jul 8;104(2):359-71. doi: 10.1016/0304-4165(65)90341-7.
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