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泰国海啸及非海啸影响地区陆生生物的微生物生态学

Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials.

作者信息

Somboonna Naraporn, Wilantho Alisa, Jankaew Kruawun, Assawamakin Anunchai, Sangsrakru Duangjai, Tangphatsornruang Sithichoke, Tongsima Sissades

机构信息

Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok, Thailand.

Genome Institute, National Center for Genetic Engineering and Biotechnology, Pathumthani, Thailand.

出版信息

PLoS One. 2014 Apr 7;9(4):e94236. doi: 10.1371/journal.pone.0094236. eCollection 2014.

Abstract

The effects of tsunamis on microbial ecologies have been ill-defined, especially in Phang Nga province, Thailand. This ecosystem was catastrophically impacted by the 2004 Indian Ocean tsunami as well as the 600 year-old tsunami in Phra Thong island, Phang Nga province. No study has been conducted to elucidate their effects on microbial ecology. This study represents the first to elucidate their effects on microbial ecology. We utilized metagenomics with 16S and 18S rDNA-barcoded pyrosequencing to obtain prokaryotic and eukaryotic profiles for this terrestrial site, tsunami affected (S1), as well as a parallel unaffected terrestrial site, non-tsunami affected (S2). S1 demonstrated unique microbial community patterns than S2. The dendrogram constructed using the prokaryotic profiles supported the unique S1 microbial communities. S1 contained more proportions of archaea and bacteria domains, specifically species belonging to Bacteroidetes became more frequent, in replacing of the other typical floras like Proteobacteria, Acidobacteria and Basidiomycota. Pathogenic microbes, including Acinetobacter haemolyticus, Flavobacterium spp. and Photobacterium spp., were also found frequently in S1. Furthermore, different metabolic potentials highlighted this microbial community change could impact the functional ecology of the site. Moreover, the habitat prediction based on percent of species indicators for marine, brackish, freshwater and terrestrial niches pointed the S1 to largely comprise marine habitat indicating-species.

摘要

海啸对微生物生态的影响一直未明确界定,尤其是在泰国攀牙府。该生态系统受到2004年印度洋海啸以及攀牙府阁通岛600年前海啸的灾难性影响。此前尚未有研究阐明这些海啸对微生物生态的影响。本研究首次阐明了它们对微生物生态的影响。我们利用宏基因组学结合16S和18S rDNA条形码焦磷酸测序,来获取这个受海啸影响的陆地地点(S1)以及一个平行的未受影响陆地地点(非海啸影响,S2)的原核生物和真核生物概况。S1展现出与S2不同的独特微生物群落模式。使用原核生物概况构建的树状图支持了S1独特的微生物群落。S1中古菌域和细菌域的比例更高,特别是属于拟杆菌门的物种变得更为常见,取代了其他典型菌群,如变形菌门、酸杆菌门和担子菌门。在S1中还频繁发现了包括溶血不动杆菌、黄杆菌属和发光杆菌属在内的致病微生物。此外,不同的代谢潜能突出表明这种微生物群落变化可能会影响该地点的功能生态。此外,基于海洋、咸淡水、淡水和陆地生态位物种指标百分比的栖息地预测表明,S1主要由海洋栖息地指示物种组成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7046/3978030/28b2199a00e7/pone.0094236.g001.jpg

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