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Base excision repair: a critical player in many games.碱基切除修复:众多过程中的关键参与者。
DNA Repair (Amst). 2014 Jul;19:14-26. doi: 10.1016/j.dnarep.2014.03.030. Epub 2014 Apr 26.
2
Keynote: past, present, and future aspects of base excision repair.主题演讲:碱基切除修复的过去、现在和未来方面
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Acetylation of oxidized base repair-initiating NEIL1 DNA glycosylase required for chromatin-bound repair complex formation in the human genome increases cellular resistance to oxidative stress.氧化碱基修复起始的 NEIL1 DNA 糖基化酶的乙酰化对于人基因组中染色质结合修复复合物的形成是必需的,这增加了细胞对氧化应激的抵抗力。
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Base excision repair modulation as a risk factor for human cancers.碱基切除修复调节作为人类癌症的一个风险因素。
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Different organization of base excision repair of uracil in DNA in nuclei and mitochondria and selective upregulation of mitochondrial uracil-DNA glycosylase after oxidative stress.细胞核和线粒体中DNA尿嘧啶碱基切除修复的不同组织方式以及氧化应激后线粒体尿嘧啶-DNA糖基化酶的选择性上调。
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Stoichiometry of base excision repair proteins correlates with increased somatic CAG instability in striatum over cerebellum in Huntington's disease transgenic mice.碱基切除修复蛋白的化学计量与亨廷顿病转基因小鼠纹状体中 CAG 不稳定性的增加相关。
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Aberrant base excision repair pathway of oxidatively damaged DNA: Implications for degenerative diseases.氧化性损伤DNA的异常碱基切除修复途径:对退行性疾病的影响
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Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.氧化性DNA损伤通过碱基切除修复调节基因转录,从而具有表观遗传学特性。
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Base excision repair of tandem modifications in a methylated CpG dinucleotide.甲基化CpG二核苷酸中串联修饰的碱基切除修复
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Real-Time, Light-Activated, and Multiplexed Monitoring of Base Excision Repair in Living Cells Using Chimeric d/l-DNA Molecular Beacons.使用嵌合d/l-DNA分子信标对活细胞中的碱基切除修复进行实时、光激活和多重监测。
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Inhibition by 4-(4-Bromo-2-oxo-3-benzimidazol-1-yl)--(4-iodophenyl)piperidine-1-carboxamide (TH5487) of the Activity of Human 8-Oxoguanine DNA Glycosylase-1 (OGG1) for the Excision of 2,6-Diamino-4-hydroxy-5-formamidopyrimidine, 4,6-Diamino-5-formamidopyrimidine, and 8-Oxoguanine from Oxidatively Damaged DNA.4-(4-溴-2-氧代-3-苯并咪唑-1-基)-N-(4-碘苯基)哌啶-1-甲酰胺(TH5487)对人8-氧代鸟嘌呤DNA糖基化酶-1(OGG1)从氧化损伤的DNA中切除2,6-二氨基-4-羟基-5-甲酰胺基嘧啶、4,6-二氨基-5-甲酰胺基嘧啶和8-氧代鸟嘌呤活性的抑制作用
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9
Repair pathway coordination from gap filling by polβ and subsequent nick sealing by LIG1 or LIG3α governs BER efficiency at the downstream steps.由polβ进行缺口填充以及随后由LIG1或LIG3α进行切口封闭所协调的修复途径,在下游步骤中决定了碱基切除修复(BER)的效率。
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Base Excision Repair in Mitotic Cells and the Role of Apurinic/Apyrimidinic Endonuclease 1 (APE1) in Post-Mitotic Transcriptional Reactivation of Genes.有丝分裂细胞中的碱基切除修复以及脱嘌呤/脱嘧啶内切核酸酶1(APE1)在有丝分裂后基因转录重新激活中的作用。
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本文引用的文献

1
Two glycosylase families diffusively scan DNA using a wedge residue to probe for and identify oxidatively damaged bases.两类糖苷酶家族使用楔状残基扩散扫描 DNA,以探测和识别氧化损伤的碱基。
Proc Natl Acad Sci U S A. 2014 May 20;111(20):E2091-9. doi: 10.1073/pnas.1400386111. Epub 2014 May 5.
2
Insights into the glycosylase search for damage from single-molecule fluorescence microscopy.单分子荧光显微镜下糖基化酶寻找损伤位点的研究洞察
DNA Repair (Amst). 2014 Aug;20:23-31. doi: 10.1016/j.dnarep.2014.01.007. Epub 2014 Feb 20.
3
Interplay between DNA repair and inflammation, and the link to cancer.DNA 修复与炎症的相互作用及其与癌症的关联。
Crit Rev Biochem Mol Biol. 2014 Mar-Apr;49(2):116-39. doi: 10.3109/10409238.2013.875514. Epub 2014 Jan 13.
4
Mutation of POLB causes lupus in mice.POLB 突变导致小鼠狼疮。
Cell Rep. 2014 Jan 16;6(1):1-8. doi: 10.1016/j.celrep.2013.12.017. Epub 2014 Jan 2.
5
Genome and cancer single nucleotide polymorphisms of the human NEIL1 DNA glycosylase: activity, structure, and the effect of editing.人类 NEIL1 DNA 糖苷酶的基因组和癌症单核苷酸多态性:活性、结构和编辑效应。
DNA Repair (Amst). 2014 Feb;14:17-26. doi: 10.1016/j.dnarep.2013.12.003. Epub 2013 Dec 29.
6
A short review on the implications of base excision repair pathway for neurons: relevance to neurodegenerative diseases.碱基切除修复途径对神经元的影响:与神经退行性疾病的相关性简述
Mitochondrion. 2014 May;16:38-49. doi: 10.1016/j.mito.2013.10.007. Epub 2013 Nov 9.
7
The E295K cancer variant of human polymerase β favors the mismatch conformational pathway during nucleotide selection.人类聚合酶β的 E295K 癌症变体在核苷酸选择过程中有利于错配构象途径。
J Biol Chem. 2013 Nov 29;288(48):34850-60. doi: 10.1074/jbc.M113.510891. Epub 2013 Oct 16.
8
Essential role for mammalian apurinic/apyrimidinic (AP) endonuclease Ape1/Ref-1 in telomere maintenance.哺乳动物脱嘌呤/脱嘧啶(AP)内切核酸酶 Ape1/Ref-1 在端粒维持中的必需作用。
Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17844-9. doi: 10.1073/pnas.1304784110. Epub 2013 Oct 14.
9
DNA glycosylases search for and remove oxidized DNA bases.DNA 糖苷酶搜索并去除氧化的 DNA 碱基。
Environ Mol Mutagen. 2013 Dec;54(9):691-704. doi: 10.1002/em.21820. Epub 2013 Oct 7.
10
Contribution of DNA unwrapping from histone octamers to the repair of oxidatively damaged DNA in nucleosomes.组蛋白八聚体解缠绕 DNA 对核小体中氧化损伤 DNA 修复的贡献。
DNA Repair (Amst). 2013 Nov;12(11):964-71. doi: 10.1016/j.dnarep.2013.08.010. Epub 2013 Sep 17.

碱基切除修复:众多过程中的关键参与者。

Base excision repair: a critical player in many games.

作者信息

Wallace Susan S

机构信息

Department of Microbiology and Molecular Genetics, The Markey Center for Molecular Genetics, The University of Vermont, 95 Carrigan Drive, Stafford Hall, Burlington, VT 05405-0084, USA.

出版信息

DNA Repair (Amst). 2014 Jul;19:14-26. doi: 10.1016/j.dnarep.2014.03.030. Epub 2014 Apr 26.

DOI:10.1016/j.dnarep.2014.03.030
PMID:24780558
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4100245/
Abstract

This perspective reviews the many dimensions of base excision repair from a 10,000 foot vantage point and provides one person's view on where the field is headed. Enzyme function is considered under the lens of X-ray diffraction and single molecule studies. Base excision repair in chromatin and telomeres, regulation of expression and the role of posttranslational modifications are also discussed in the context of enzyme activities, cellular localization and interacting partners. The specialized roles that base excision repair play in transcriptional activation by active demethylation and targeted oxidation as well as how base excision repair functions in the immune processes of somatic hypermutation and class switch recombination and its possible involvement in retroviral infection are also discussed. Finally the complexities of oxidative damage and its repair and its link to neurodegenerative disorders, as well as the role of base excision repair as a tumor suppressor are examined in the context of damage, repair and aging. By outlining the many base excision repair-related mysteries that have yet to be unraveled, hopefully this perspective will stimulate further interest in the field.

摘要

本文从宏观角度综述了碱基切除修复的多个方面,并就该领域的发展方向提出了个人观点。酶的功能是在X射线衍射和单分子研究的视角下进行考量的。染色质和端粒中的碱基切除修复、表达调控以及翻译后修饰的作用也在酶活性、细胞定位和相互作用伙伴的背景下进行了讨论。还讨论了碱基切除修复通过主动去甲基化和靶向氧化在转录激活中所起的特殊作用,以及碱基切除修复在体细胞超突变和类别转换重组的免疫过程中的功能及其可能参与逆转录病毒感染的情况。最后,在损伤、修复和衰老的背景下,研究了氧化损伤及其修复的复杂性及其与神经退行性疾病的联系,以及碱基切除修复作为肿瘤抑制因子的作用。通过概述许多尚未解开的与碱基切除修复相关的谜团,希望本文能激发该领域更多的兴趣。