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对中国贵州省温泉微生物群落和功能特性的宏基因组学见解。

Metagenomic insights into the microbial communities and functional traits of hot springs in Guizhou Province, China.

作者信息

Chen Feng, Cheng Min, Rong Dongyun, Wang Yanyan, Liang Rubing, Irfan Muhammad, Kang Yingqian, Cao Yu

机构信息

School of Public Health, The Key Laboratory of Environmental Pollution Monitoring and Disease Control, Ministry of Education & Guizhou Key Laboratory of Microbiome and Infectious Disease Prevention & Control & School of Basic Medical Science & Institution of One Health Research, Guizhou Medical University, Guiyang, China.

Department of Nosocomial Infection Management, The Affiliated Hospital of Guizhou Medical University, Guiyang, China.

出版信息

Front Microbiol. 2025 Jun 25;16:1615879. doi: 10.3389/fmicb.2025.1615879. eCollection 2025.

Abstract

INTRODUCTION

Hot springs were previously believed to be uninhabitable due to their hostile nature. However, recent studies have determined that hot springs not only have a rich microbiota but are also involved in various biogeochemical processes and possess unique characteristics that can be utilized for several biotechnological applications. This study aimed to determine the bacterial taxonomic diversity and functional profiles of 11 hot springs in the Guizhou Province, China.

METHODS

Illumina high-throughput sequencing was used to sequence the V3-V4 region of the 16S rRNA gene from microorganisms in samples collected from these hot springs. Software such as Mothur, the SILVA ribosomal RNA database, and Quantitative Insights into Microbial Ecology (QIIME) were utilized for taxonomic and operational taxonomic unit (OTU) analysis, while PICRUST2 was employed for functional predictions.

RESULTS

Guizhou Baili Rhododendron Hot Spring No.1 (BLDJA) had the highest diversity in terms of species richness, while Jianhe Hot Spring (YAS) had the lowest diversity. At the phylum level, the highest reported phyla included , and , where had the highest abundance (92.094%) in Jianhe Hot Spring (YAS) and the lowest (41.238%) in Guizhou Baili Rhododendron Hot Spring No. 2 (BLDJB). has the highest abundance (39.178%) in Guizhou Baili Rhododendron Hot Spring No. 2 (BLDJB) and the lowest (0.547%) in Jiutian Hot Spring (SNJT). The highest predicted functions were observed for amino acid metabolism, followed by carbohydrates. Predicted pathways for secondary metabolite and vitamin synthesis, along with stress-adaptation genes, underscore the biotechnological value of these habitats.

DISCUSSION

This study presents a preliminary survey of 11 hot springs in Guizhou Province, providing important insights into the origin and evolution of microorganisms. Furthermore, studying these microorganisms is crucial for understanding the adaptive mechanisms of life under extreme conditions, such as high temperatures, and for exploring the potential biotechnological applications of these microbes. An in-depth approach combining functional metagenomics and next-generation culturomics is required to fully understand the microbial flora and its potential biotechnological applications.

摘要

引言

由于其恶劣的环境,温泉曾被认为不适宜生物生存。然而,最近的研究表明,温泉不仅拥有丰富的微生物群落,还参与各种生物地球化学过程,并且具有独特的特性,可用于多种生物技术应用。本研究旨在确定中国贵州省11个温泉的细菌分类多样性和功能概况。

方法

使用Illumina高通量测序技术对从这些温泉采集的样本中的微生物16S rRNA基因的V3-V4区域进行测序。利用Mothur、SILVA核糖体RNA数据库和微生物生态学定量洞察(QIIME)等软件进行分类和操作分类单元(OTU)分析,同时使用PICRUST2进行功能预测。

结果

贵州百里杜鹃一号温泉(BLDJA)在物种丰富度方面具有最高的多样性,而剑河温泉(YAS)多样性最低。在门水平上,报道最多的门包括……,其中……在剑河温泉(YAS)中丰度最高(92.094%),在贵州百里杜鹃二号温泉(BLDJB)中最低(41.238%)。……在贵州百里杜鹃二号温泉(BLDJB)中丰度最高(39.178%),在九天温泉(SNJT)中最低(0.547%)。预测功能最高的是氨基酸代谢,其次是碳水化合物。次生代谢物和维生素合成的预测途径以及应激适应基因突出了这些生境的生物技术价值。

讨论

本研究对贵州省的11个温泉进行了初步调查,为微生物的起源和进化提供了重要见解。此外,研究这些微生物对于理解高温等极端条件下生命的适应机制以及探索这些微生物的潜在生物技术应用至关重要。需要结合功能宏基因组学和新一代培养组学的深入方法来全面了解微生物群落及其潜在的生物技术应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/12239760/b482738cb66d/fmicb-16-1615879-g0003.jpg

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