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翅目蜉蝣的系统发育关系,由中华螳䗛的线粒体基因组揭示(六足亚门:昆虫纲)。

The phylogeny of Ephemeroptera in Pterygota revealed by the mitochondrial genome of Siphluriscus chinensis (Hexapoda: Insecta).

机构信息

The Key Laboratory of Jiangsu Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China; College of Life Sciences, East China Normal University, Shanghai 200241, China.

The Key Laboratory of Jiangsu Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.

出版信息

Gene. 2014 Jul 15;545(1):132-40. doi: 10.1016/j.gene.2014.04.059. Epub 2014 Apr 26.

Abstract

The mayfly species Siphluriscus chinensis (Siphluriscidae) has valuable structures useful for phylogeny reconstruction, given its putative basal position within the Ephemeroptera. Here its nearly complete mitochondrial genome is sequenced. We built phylogenetic trees through multiple analytical strategies with some other insect mitogenomes. Structurally, the obtained mitochondrial genome of S. chinensis is 16,616 bp in length,(1) containing 37 genes and an extra trnK-like (trnK2 (AAA)) gene. The 12 PCGs start with typical ATN codons, except the nad1 gene which starts with an unnormalized TTG. Like other known mayfly mitogenomes, the strand bias has negative AT-skew and negative GC-skew. Phylogenetically, our topologies suggest that Odonata is the basally diverged clade in Pterygota; Ephemeroptera is the sister group of the Neoptera; and S. chinensis is indeed the most basal mayfly branch.

摘要

蜉蝣目蜉蝣科的中华石蝇(Siphluriscus chinensis)因其在蜉蝣目中的假定基干位置而具有用于系统发育重建的有价值的结构。本文对其近乎完整的线粒体基因组进行了测序。我们通过一些其他昆虫的线粒体基因组的多种分析策略构建了系统发育树。在结构上,获得的中华石蝇的线粒体基因组长度为 16616bp,(1)包含 37 个基因和一个额外的 trnK 样基因(trnK2 (AAA))。12 个 PCGs 以典型的 ATN 密码子开始,除了 nad1 基因以非标准化的 TTG 开始。与其他已知的蜉蝣线粒体基因组一样,该链的偏向性具有负的 AT-倾斜和负的 GC-倾斜。系统发育上,我们的拓扑结构表明,蜻蜓目是翼龙目中最早分化的分支;蜉蝣目是新翅目昆虫的姊妹群;中华石蝇确实是最基础的蜉蝣分支。

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