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B细胞发育过程中染色质与转录因子网络之间的相互作用:谁先扣动扳机?

The Interplay between Chromatin and Transcription Factor Networks during B Cell Development: Who Pulls the Trigger First?

作者信息

Choukrallah Mohamed Amin, Matthias Patrick

机构信息

Friedrich Miescher Institute for Biomedical Research , Basel , Switzerland.

Friedrich Miescher Institute for Biomedical Research , Basel , Switzerland ; Faculty of Sciences, University of Basel , Basel , Switzerland.

出版信息

Front Immunol. 2014 Apr 11;5:156. doi: 10.3389/fimmu.2014.00156. eCollection 2014.

Abstract

All mature blood cells derive from hematopoietic stem cells through gradual restriction of their cell fate potential and acquisition of specialized functions. Lineage specification and cell commitment require the establishment of specific transcriptional programs involving the activation of lineage-specific genes and the repression of lineage-inappropriate genes. This process requires the concerted action of transcription factors (TFs) and epigenetic modifying enzymes. Within the hematopoietic system, B lymphopoiesis is one of the most-studied differentiation programs. Loss of function studies allowed the identification of many TFs and epigenetic modifiers required for B cell development. The usage of systematic analytical techniques such as transcriptome determination, genome-wide mapping of TF binding and epigenetic modifications, and mass spectrometry analyses, allowed to gain a systemic description of the intricate networks that guide B cell development. However, the precise mechanisms governing the interaction between TFs and chromatin are still unclear. Generally, chromatin structure can be remodeled by some TFs but in turn can also regulate (i.e., prevent or promote) the binding of other TFs. This conundrum leads to the crucial questions of who is on first, when, and how. We review here the current knowledge about TF networks and epigenetic regulation during hematopoiesis, with an emphasis on B cell development, and discuss in particular the current models about the interplay between chromatin and TFs.

摘要

所有成熟血细胞都通过逐渐限制其细胞命运潜能并获得特定功能,从造血干细胞分化而来。谱系特化和细胞定向分化需要建立特定的转录程序,这涉及谱系特异性基因的激活和谱系不适当基因的抑制。这个过程需要转录因子(TFs)和表观遗传修饰酶的协同作用。在造血系统中,B淋巴细胞生成是研究最多的分化程序之一。功能缺失研究使人们能够鉴定出许多B细胞发育所需的转录因子和表观遗传修饰因子。使用诸如转录组测定、转录因子结合和表观遗传修饰的全基因组图谱绘制以及质谱分析等系统分析技术,使人们能够对指导B细胞发育的复杂网络进行系统描述。然而,转录因子与染色质之间相互作用的精确机制仍不清楚。一般来说,染色质结构可以被一些转录因子重塑,但反过来也可以调节(即阻止或促进)其他转录因子的结合。这个难题引出了关键问题:谁先起作用、何时起作用以及如何起作用。我们在此回顾造血过程中关于转录因子网络和表观遗传调控的当前知识,重点是B细胞发育,并特别讨论关于染色质与转录因子之间相互作用的当前模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a33b/3990105/067e62bf9f04/fimmu-05-00156-g001.jpg

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