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Improved predictions of secondary structures for RNA.
Proc Natl Acad Sci U S A. 1989 Oct;86(20):7706-10. doi: 10.1073/pnas.86.20.7706.
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Secondary structure prediction of interacting RNA molecules.
J Mol Biol. 2005 Feb 4;345(5):987-1001. doi: 10.1016/j.jmb.2004.10.082. Epub 2004 Dec 16.
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A pseudoknotted RNA oligonucleotide.
Nature. 1988 Jan 21;331(6153):283-6. doi: 10.1038/331283a0.
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Bridging the gap in RNA structure prediction.
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The computer simulation of RNA folding involving pseudoknot formation.
Nucleic Acids Res. 1991 May 11;19(9):2489-94. doi: 10.1093/nar/19.9.2489.

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The RNA-DNA world and the emergence of DNA-encoded heritable traits.
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Functional knockout of long non-coding RNAs with genome editing.
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Led-Seq: ligation-enhanced double-end sequence-based structure analysis of RNA.
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Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects.
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Developing an Updated Strategy for Estimating the Free-Energy Parameters in RNA Duplexes.
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Scum of the Earth: A Hypothesis for Prebiotic Multi-Compartmentalised Environments.
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2
Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure.
Biochimie. 1982 Oct;64(10):867-81. doi: 10.1016/s0300-9084(82)80349-0.
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An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules.
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):31-44. doi: 10.1093/nar/12.1part1.31.
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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
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Free energy of imperfect nucleic acid helices. I. The bulge defect.
J Mol Biol. 1972 Apr 28;66(1):1-12. doi: 10.1016/s0022-2836(72)80002-0.
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Estimation of secondary structure in ribonucleic acids.
Nature. 1971 Apr 9;230(5293):362-7. doi: 10.1038/230362a0.
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Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.
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Free energy of imperfect nucleic acid helices. II. Small hairpin loops.
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