相似文献
1
An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules.
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):31-44. doi: 10.1093/nar/12.1part1.31.
2
Energy directed folding of RNA sequences.
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):67-74. doi: 10.1093/nar/12.1part1.67.
3
A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.
Nucleic Acids Res. 1981 Apr 24;9(8):1885-904. doi: 10.1093/nar/9.8.1885.
4
Method for predicting RNA secondary structure.
Proc Natl Acad Sci U S A. 1975 Jun;72(6):2017-21. doi: 10.1073/pnas.72.6.2017.
5
[Prediction of secondary structures of nucleic acids: algorithmic and physical aspects].
Biochimie. 1985 May;67(5):523-31. doi: 10.1016/s0300-9084(85)80272-8.
6
An RNA folding rule.
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):323-34. doi: 10.1093/nar/12.1part1.323.
7
The evolution of 5S RNA secondary structures.
Can J Biochem. 1978 Jun;56(6):440-3. doi: 10.1139/o78-068.
8
Computer building and folding of fictitious transfer-RNA sequences.
Biochimie. 1983 Apr-May;65(4-5):267-73. doi: 10.1016/s0300-9084(83)80278-8.
9
A study of the conformation of 5S RNA by 31P NMR.
Nucleic Acids Res. 1989 Sep 25;17(18):7295-302. doi: 10.1093/nar/17.18.7295.
10
Computer-aided prediction of RNA secondary structures.
Nucleic Acids Res. 1982 Jan 11;10(1):403-19. doi: 10.1093/nar/10.1.403.
引用本文的文献
1
DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data.
Bioinformatics. 2019 Dec 15;35(24):5103-5112. doi: 10.1093/bioinformatics/btz449.
2
Folding and finding RNA secondary structure.
Cold Spring Harb Perspect Biol. 2010 Dec;2(12):a003665. doi: 10.1101/cshperspect.a003665. Epub 2010 Aug 4.
3
Inverse folding of RNA pseudoknot structures.
Algorithms Mol Biol. 2010 Jun 23;5:27. doi: 10.1186/1748-7188-5-27.
4
Energetic signatures of single base bulges: thermodynamic consequences and biological implications.
Nucleic Acids Res. 2010 Jan;38(1):97-116. doi: 10.1093/nar/gkp1036. Epub 2009 Nov 27.
5
Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences.
BMC Bioinformatics. 2007 Nov 28;8:464. doi: 10.1186/1471-2105-8-464.
6
HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
RNA. 2005 Oct;11(10):1494-504. doi: 10.1261/rna.7284905.
7
Chemical and computer probing of RNA structure.
Prog Nucleic Acid Res Mol Biol. 1996;53:131-96. doi: 10.1016/s0079-6603(08)60144-0.
8
Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions.
Nucleic Acids Res. 1994 Apr 11;22(7):1247-56. doi: 10.1093/nar/22.7.1247.
9
Prediction of alternative RNA secondary structures based on fluctuating thermodynamic parameters.
Nucleic Acids Res. 1993 May 11;21(9):2173-8. doi: 10.1093/nar/21.9.2173.
10
Role of an RNA cleavage/poly(A) addition site in the production of membrane-bound and secreted IgM mRNA.
Proc Natl Acad Sci U S A. 1985 Dec;82(24):8658-62. doi: 10.1073/pnas.82.24.8658.
本文引用的文献
1
The effects of base sequence and dangling bases on the stability of short ribonucleic acid duplexes.
Nucleic Acids Symp Ser. 1980(7):293-311.
2
The sequence of the 5.8 S ribosomal RNA of the crustacean Artemia salina. With a proposal for a general secondary structure model for 5.8 S ribosomal RNA.
Nucleic Acids Res. 1982 Jun 11;10(11):3517-30. doi: 10.1093/nar/10.11.3517.
3
The ten helical twist angles of B-DNA.
Nucleic Acids Res. 1982 Feb 11;10(3):1097-104. doi: 10.1093/nar/10.3.1097.
4
Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA.
Nucleic Acids Res. 1982 Jan 11;10(1):341-9. doi: 10.1093/nar/10.1.341.
5
Collection of published 5S and 5.8S ribosomal RNA sequences.
Nucleic Acids Res. 1983 Jan 11;11(1):r105-33.
6
High-resolution NMR studies of A- and G-containing oligonucleotides.
Biopolymers. 1983 Mar;22(3):919-33. doi: 10.1002/bip.360220313.
7
Self base pairing in a complementary deoxydinucleoside monophosphate duplex: crystal and molecular structure of deoxycytidylyl-(3'-5')-deoxyguanosine.
Biochemistry. 1983 Apr 12;22(8):1833-9. doi: 10.1021/bi00277a014.
8
Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure.
Biochimie. 1982 Oct;64(10):867-81. doi: 10.1016/s0300-9084(82)80349-0.
9
Determination of the secondary structure of Drosophila melanogaster 5 S RNA by hydroxymethyltrimethylpsoralen crosslinking.
J Mol Biol. 1981 Apr 15;147(3):417-36. doi: 10.1016/0022-2836(81)90493-9.
10
Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA.
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2150-4. doi: 10.1073/pnas.78.4.2150.
Zotero 插件