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基于固态纳米孔的 DNA 测序的计算研究:关键问题与未来展望。

Computational studies of DNA sequencing with solid-state nanopores: key issues and future prospects.

机构信息

Division of Theoretical Chemistry and Biology, School of Biotechnology, KTH Royal Institute of Technology Stockholm, Sweden ; Department of Chemistry and Soft Matter Research Center, Zhejiang University Hangzhou, China.

Department of Chemistry and Soft Matter Research Center, Zhejiang University Hangzhou, China.

出版信息

Front Chem. 2014 Feb 21;2:5. doi: 10.3389/fchem.2014.00005. eCollection 2014.

DOI:10.3389/fchem.2014.00005
PMID:24790974
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3982512/
Abstract

Owing to the potential use for real personalized genome sequencing, DNA sequencing with solid-state nanopores has been investigated intensively in recent time. However, the area still confronts problems and challenges. In this work, we present a brief overview of computational studies of key issues in DNA sequencing with solid-state nanopores by addressing the progress made in the last few years. We also highlight future challenges and prospects for DNA sequencing using this technology.

摘要

由于真正的个性化基因组测序具有潜在的应用前景,近年来,基于固态纳米孔的 DNA 测序技术得到了深入的研究。然而,该领域仍然面临着问题和挑战。在这项工作中,我们通过讨论过去几年取得的进展,对固态纳米孔 DNA 测序中的关键问题的计算研究进行了简要概述。我们还强调了使用这项技术进行 DNA 测序的未来挑战和前景。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce31/3982512/86025ca818ff/fchem-02-00005-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce31/3982512/86025ca818ff/fchem-02-00005-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce31/3982512/86025ca818ff/fchem-02-00005-g0001.jpg

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本文引用的文献

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Advances in nanopore sequencing technology.纳米孔测序技术的进展
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2
Genotype imputation in genome-wide association studies.全基因组关联研究中的基因型填充
Curr Protoc Hum Genet. 2013 Jul;Chapter 1:Unit 1.25. doi: 10.1002/0471142905.hg0125s78.
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Thermophoretic manipulation of DNA translocation through nanopores.通过纳米孔进行热泳操控 DNA 迁移。
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Dynamics of DNA translocation in a solid-state nanopore immersed in aqueous glycerol.DNA 在浸润于水-甘油混合溶液中的固态纳米孔中的迁移动力学。
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On the Lubensky-Nelson model of polymer translocation through nanopores.关于聚合物通过纳米孔的 Lubensky-Nelson 模型。
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