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CS-RASREC-Rosetta中的自动NOESY归属

Automatic NOESY assignment in CS-RASREC-Rosetta.

作者信息

Lange Oliver F

机构信息

Biomolecular NMR and Munich Center for Integrated Protein Science, Department Chemie, Technische Universität München, Lichtenbergstrasse 4, 85747, Garching, Germany,

出版信息

J Biomol NMR. 2014 Jul;59(3):147-59. doi: 10.1007/s10858-014-9833-3. Epub 2014 May 16.

Abstract

We have developed an approach for simultaneous structure calculation and automatic Nuclear Overhauser Effect (NOE) assignment to solve nuclear magnetic resonance (NMR) structures from unassigned NOESY data. The approach, autoNOE-Rosetta, integrates Resolution Adapted Structural RECombination (RASREC) Rosetta NMR calculations with algorithms for automatic NOE assignment. The method was applied to two proteins in the 15-20 kDa size range for which both, NMR and X-ray data, is available. The autoNOE-Rosetta calculations converge for both proteins and yield accurate structures with an RMSD of 1.9 Å to the X-ray reference structures. The method greatly expands the radius of convergence for automatic NOE assignment, and should be broadly useful for NMR structure determination.

摘要

我们开发了一种同时进行结构计算和自动核Overhauser效应(NOE)归属的方法,用于从未归属的NOESY数据解析核磁共振(NMR)结构。该方法autoNOE-Rosetta将分辨率适应性结构重组(RASREC)Rosetta NMR计算与自动NOE归属算法相结合。该方法应用于两种大小在15 - 20 kDa范围内的蛋白质,这两种蛋白质都有NMR和X射线数据。autoNOE-Rosetta计算对这两种蛋白质都收敛,并产生与X射线参考结构的均方根偏差(RMSD)为1.9 Å的准确结构。该方法极大地扩展了自动NOE归属的收敛半径,对于NMR结构测定应该具有广泛的用途。

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