Suppr超能文献

致病性大肠杆菌的C-糖基转移酶IroB:高效催化所需残基的鉴定

The C-glycosyltransferase IroB from pathogenic Escherichia coli: identification of residues required for efficient catalysis.

作者信息

Foshag Daniel, Campbell Cory, Pawelek Peter D

机构信息

Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke St. W., Montreal, Quebec H4B 1R6, Canada.

Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke St. W., Montreal, Quebec H4B 1R6, Canada; Groupe de Recherche Axé sur la Structure des Protéines (GRASP), Canada.

出版信息

Biochim Biophys Acta. 2014 Sep;1844(9):1619-30. doi: 10.1016/j.bbapap.2014.06.010. Epub 2014 Jun 21.

Abstract

Escherichia coli C-glycosyltransferase IroB catalyzes the formation of a CC bond between enterobactin and the glucose moiety of UDP-glucose, resulting in the production of mono-, di- and tri-glucosylated enterobactin (MGE, DGE, TGE). To identify catalytic residues, we generated a homology model of IroB from aligned structures of two similar C-glycosyltransferases as templates. Superposition of our homology model onto the structure of a TDP-bound orthologue revealed residue W264 as a possible stabilizer of UDP-glucose. D304 in our model was located near the predicted site of the glucose moiety of UDP-glucose. A loop containing possible catalytic residues (H65, H66, E67) was found at the predicted enterobactin-binding site. We generated IroB variants at positions 65-67, 264, and 304 and investigated variant protein conformations and enzymatic activities. Variants were found to have Tm values similar to wild-type IroB. Fluorescence emission spectra of H65A/H66A, E67A, and D304N were superimposable with wild-type IroB. However, the emission spectrum of W264L was blue-shifted, suggesting solvent exposure of W264. While H65A/H66A retained activity (92% conversion of enterobactin, with MGE as a major product), all other IroB variants were impaired in their abilities to glucosylate enterobactin: E67A catalyzed partial (29%) conversion of enterobactin to MGE; W264L converted 55% of enterobactin to MGE; D304N was completely inactive. Activity-impaired variants were found to bind enterobactin with affinities within 2.5-fold of wild-type IroB. Given our outcomes, we propose that IroB W264 and D304 are required for binding and orienting UDP-glucose, while E67, possibly supported by H65/H66, participates in enterobactin/MGE/DGE deprotonation.

摘要

大肠杆菌C-糖基转移酶IroB催化肠杆菌素与UDP-葡萄糖的葡萄糖部分之间形成C-C键,从而产生单、二和三葡萄糖基化肠杆菌素(MGE、DGE、TGE)。为了鉴定催化残基,我们以两种相似的C-糖基转移酶的比对结构为模板生成了IroB的同源模型。将我们的同源模型与结合TDP的同源物结构叠加,发现残基W264可能是UDP-葡萄糖的稳定剂。我们模型中的D304位于UDP-葡萄糖的葡萄糖部分的预测位点附近。在预测的肠杆菌素结合位点发现了一个包含可能催化残基(H65、H66、E67)的环。我们在65-67、264和304位生成了IroB变体,并研究了变体蛋白的构象和酶活性。发现变体的熔点值与野生型IroB相似。H65A/H66A、E67A和D304N的荧光发射光谱与野生型IroB可叠加。然而,W264L的发射光谱发生蓝移,表明W264暴露于溶剂中。虽然H65A/H66A保留了活性(肠杆菌素转化率为92%,主要产物为MGE),但所有其他IroB变体在使肠杆菌素糖基化的能力上都受到损害:E67A催化肠杆菌素部分(29%)转化为MGE;W264L将55%的肠杆菌素转化为MGE;D304N完全无活性。发现活性受损的变体与肠杆菌素的结合亲和力在野生型IroB的2.5倍以内。根据我们的结果,我们提出IroB的W264和D304是结合和定向UDP-葡萄糖所必需的,而E67可能在H65/H66的支持下参与肠杆菌素/MGE/DGE的去质子化。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验