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抗肿瘤蒽环类抗生素科斯莫霉素D的产生菌奥林登链霉菌DAUFPE 5622的基因组序列

Genome Sequence of Streptomyces olindensis DAUFPE 5622, Producer of the Antitumoral Anthracycline Cosmomycin D.

作者信息

Rojas Juan D, Starcevic Antonio, Baranas̆ić Damir, Ferreira-Torres Maria A, Contreras Camilo A, Garrido Leandro M, Araújo Welington L, de Souza Robson F, Zucko Jurica, Hranueli Daslav, Long Paul F, Cullum John, Padilla Gabriel

机构信息

Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.

Faculty of Food Technology and Biotechnology, University of Zagreb, Zagreb, Croatia.

出版信息

Genome Announc. 2014 Jun 26;2(3):e00541-14. doi: 10.1128/genomeA.00541-14.

DOI:10.1128/genomeA.00541-14
PMID:24970824
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4073108/
Abstract

Streptomyces olindensis DAUFPE 5622, which was isolated from a Brazilian soil sample, produces the antitumor anthracycline cosmomycin D. The genome sequence is 9.4 Mb in length, with a G+C content of 71%. Thirty-four putative secondary metabolite biosynthetic gene clusters were identified, including the cosmomycin D cluster.

摘要

从巴西土壤样本中分离出的橄榄链霉菌DAUFPE 5622可产生抗肿瘤蒽环类抗生素科斯莫霉素D。其基因组序列长度为9.4 Mb,G+C含量为71%。已鉴定出34个推定的次生代谢物生物合成基因簇,包括科斯莫霉素D基因簇。

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本文引用的文献

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antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.antiSMASH 2.0——一个用于次级代谢产物产生菌基因组挖掘的通用平台。
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W204-12. doi: 10.1093/nar/gkt449. Epub 2013 Jun 3.
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DNA damage induced by the anthracycline cosmomycin D in DNA repair-deficient cells.在 DNA 修复缺陷细胞中,蒽环类抗生素 cosmomycin D 诱导的 DNA 损伤。
Cancer Chemother Pharmacol. 2010 Apr;65(5):989-94. doi: 10.1007/s00280-010-1244-x. Epub 2010 Jan 28.
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Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.迈向用于(宏)基因组注释的标准操作程序(SOP)在线存储库。
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Insights in the glycosylation steps during biosynthesis of the antitumor anthracycline cosmomycin: characterization of two glycosyltransferase genes.抗肿瘤蒽环类抗生素科斯莫霉素生物合成过程中糖基化步骤的见解:两个糖基转移酶基因的表征
Appl Microbiol Biotechnol. 2006 Nov;73(1):122-31. doi: 10.1007/s00253-006-0453-z. Epub 2006 Jun 30.
7
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.用于检测tRNA和snoRNA的tRNAscan-SE、snoscan和snoGPS网络服务器。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W686-9. doi: 10.1093/nar/gki366.
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DNA-binding properties of cosmomycin D, an anthracycline with two trisaccharide chains.科斯莫霉素D的DNA结合特性,一种带有两条三糖链的蒽环类抗生素。
J Antibiot (Tokyo). 2004 Oct;57(10):647-54. doi: 10.7164/antibiotics.57.647.
9
Improved microbial gene identification with GLIMMER.利用GLIMMER改进微生物基因识别。
Nucleic Acids Res. 1999 Dec 1;27(23):4636-41. doi: 10.1093/nar/27.23.4636.
10
The conjugative plasmid SLP2 of Streptomyces lividans is a 50 kb linear molecule.天蓝色链霉菌的接合质粒SLP2是一个50 kb的线性分子。
Mol Microbiol. 1993 Mar;7(6):925-32. doi: 10.1111/j.1365-2958.1993.tb01183.x.