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干细胞研究中的转录组学和蛋白质组学。

Transcriptomics and proteomics in stem cell research.

作者信息

Wang Hai, Zhang Qian, Fang Xiangdong

机构信息

CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, 100101, China.

出版信息

Front Med. 2014 Dec;8(4):433-44. doi: 10.1007/s11684-014-0336-0. Epub 2014 Jun 27.

DOI:10.1007/s11684-014-0336-0
PMID:24972645
Abstract

Stem cells are capable of self-renewal and differentiation, and the processes regulating these events are among the most comprehensively investigated topics in life sciences. In particular, the molecular mechanisms of the self-renewal, proliferation, and differentiation of stem cells have been extensively examined. Multi-omics integrative analysis, such as transcriptomics combined with proteomics, is one of the most promising approaches to the systemic investigation of stem cell biology. We reviewed the available information on stem cells by examining published results using transcriptomic and proteomic characterization of the different stem cell processes. Comprehensive understanding of these important processes can only be achieved using a systemic methodology, and employing such method will strengthen the study on stem cell biology and promote the clinical applications of stem cells.

摘要

干细胞具有自我更新和分化的能力,而调控这些过程的机制是生命科学中研究最为全面的课题之一。特别是,干细胞自我更新、增殖和分化的分子机制已经得到了广泛研究。多组学整合分析,如转录组学与蛋白质组学相结合,是系统研究干细胞生物学最具前景的方法之一。我们通过检查已发表的关于不同干细胞过程的转录组学和蛋白质组学特征的结果,回顾了有关干细胞的现有信息。只有使用系统方法才能全面理解这些重要过程,采用这种方法将加强干细胞生物学的研究,并促进干细胞的临床应用。

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1
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引用本文的文献

1
Web resources for stem cell research.干细胞研究的网络资源。
Genomics Proteomics Bioinformatics. 2015 Feb;13(1):40-5. doi: 10.1016/j.gpb.2015.01.001. Epub 2015 Feb 18.
2
Systems-based technologies in profiling the stem cell molecular framework for cardioregenerative medicine.基于系统的技术在心脏再生医学中分析干细胞分子框架。
Stem Cell Rev Rep. 2015 Jun;11(3):501-10. doi: 10.1007/s12015-014-9557-5.

本文引用的文献

1
p63 isoforms regulate metabolism of cancer stem cells.p63 异构体调节癌症干细胞的代谢。
J Proteome Res. 2014 Apr 4;13(4):2120-36. doi: 10.1021/pr4012574. Epub 2014 Mar 19.
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Identification of proteins related to epigenetic regulation in the malignant transformation of aberrant karyotypic human embryonic stem cells by quantitative proteomics.通过定量蛋白质组学鉴定异常核型人类胚胎干细胞恶性转化中与表观遗传调控相关的蛋白质。
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SILAC proteomics of planarians identifies Ncoa5 as a conserved component of pluripotent stem cells.
秀丽隐杆线虫 SILAC 蛋白质组学鉴定 Ncoa5 为多能干细胞的保守成分。
Cell Rep. 2013 Nov 27;5(4):1142-55. doi: 10.1016/j.celrep.2013.10.035. Epub 2013 Nov 21.
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Transcriptome dynamics during human erythroid differentiation and development.人类红细胞分化和发育过程中的转录组动态。
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Surface proteomic analysis of differentiated versus stem-like osteosarcoma human cells.分化型与干细胞样骨肉瘤人细胞的表面蛋白质组分析。
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RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells.RNA-Seq 揭示剪接体和蛋白酶体基因是人类癌细胞中最一致的转录本。
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Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells.单细胞 RNA 测序分析人类着床前胚胎和胚胎干细胞。
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ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells.ESCAPE:整合来自人类和小鼠胚胎干细胞的高内涵发表数据的数据库。
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Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency.蛋白质组学和基因组学方法揭示了 H3K9 甲基化和异染色质蛋白-1γ在重编程为多能性中的关键功能。
Nat Cell Biol. 2013 Jul;15(7):872-82. doi: 10.1038/ncb2768. Epub 2013 Jun 9.
10
In vivo RNAi screen for BMI1 targets identifies TGF-β/BMP-ER stress pathways as key regulators of neural- and malignant glioma-stem cell homeostasis.体内 RNAi 筛选 BMI1 靶标鉴定 TGF-β/BMP-ER 应激途径作为神经和恶性神经胶质瘤干细胞内稳态的关键调节剂。
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