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南极高原( Dome C)的雪面微生物群落

Snow surface microbiome on the High Antarctic Plateau (DOME C).

作者信息

Michaud Luigi, Lo Giudice Angelina, Mysara Mohamed, Monsieurs Pieter, Raffa Carmela, Leys Natalie, Amalfitano Stefano, Van Houdt Rob

机构信息

Department of Biological and Environmental Sciences, University of Messina, Messina, Italy.

Unit of Microbiology, Belgian Nuclear Research Centre (SCK•CEN), Mol, Belgium; Department of Bioscience Engineering, Vrije Universiteit Brussel, Brussels, Belgium.

出版信息

PLoS One. 2014 Aug 7;9(8):e104505. doi: 10.1371/journal.pone.0104505. eCollection 2014.

Abstract

The cryosphere is an integral part of the global climate system and one of the major habitable ecosystems of Earth's biosphere. These permanently frozen environments harbor diverse, viable and metabolically active microbial populations that represent almost all the major phylogenetic groups. In this study, we investigated the microbial diversity in the surface snow surrounding the Concordia Research Station on the High Antarctic Plateau through a polyphasic approach, including direct prokaryotic quantification by flow cytometry and catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH), and phylogenetic identification by 16S RNA gene clone library sequencing and 454 16S amplicon pyrosequencing. Although the microbial abundance was low (<10(3) cells/ml of snowmelt), concordant results were obtained with the different techniques. The microbial community was mainly composed of members of the Alpha-proteobacteria class (e.g. Kiloniellaceae and Rhodobacteraceae), which is one of the most well-represented bacterial groups in marine habitats, Bacteroidetes (e.g. Cryomorphaceae and Flavobacteriaceae) and Cyanobacteria. Based on our results, polar microorganisms could not only be considered as deposited airborne particles, but as an active component of the snowpack ecology of the High Antarctic Plateau.

摘要

冰冻圈是全球气候系统的一个组成部分,也是地球生物圈主要的可栖息生态系统之一。这些永久冻结的环境中蕴藏着多样、可存活且代谢活跃的微生物种群,它们几乎代表了所有主要的系统发育类群。在本研究中,我们采用了多相方法,包括通过流式细胞术和催化报告沉积荧光原位杂交(CARD-FISH)进行原核生物直接定量,以及通过16S RNA基因克隆文库测序和454 16S扩增子焦磷酸测序进行系统发育鉴定,来研究南极高原康科迪亚研究站周边表层雪中的微生物多样性。尽管微生物丰度较低(融雪水中<10³ 个细胞/毫升),但不同技术获得了一致的结果。微生物群落主要由α-变形菌纲成员(如基洛尼尔菌科和红杆菌科)组成,这是海洋栖息地中代表性最强的细菌类群之一,还有拟杆菌门(如嗜冷菌科和黄杆菌科)和蓝细菌。根据我们的研究结果,极地微生物不仅可被视为沉积的空气传播颗粒,而且是南极高原积雪生态的一个活跃组成部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d66/4125213/017a62d668b2/pone.0104505.g001.jpg

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