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复活的微生物:大量处于休眠状态的细菌正准备与人类互动。

Resurrected microorganisms: a plethora of resting bacteria underway for human interaction.

作者信息

Amin Arshia, Khan Inam Ullah, Amin Mehroze, Fatima Maliha, Sajjad Wasim, Shah Tawaf Ali, Dawoud Turki M, Wondmie Gezahign Fentahun

机构信息

Faculty of Health and Life Sciences, Capital University of Science and Technology, Islamabad, Pakistan.

Gomal University, Dera Ismail Khan, Pakistan.

出版信息

AMB Express. 2024 Sep 28;14(1):106. doi: 10.1186/s13568-024-01750-z.

DOI:10.1186/s13568-024-01750-z
PMID:39342060
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11438741/
Abstract

Glaciers, which form due to the accumulation of snow, play a crucial role in providing freshwater resources, supporting river systems, and maintaining ecosystem stability. Pakistan is habitat to over 5000 glaciers, primarily located in the Hindukash, Himalaya, and Karakoram mountain ranges. Understanding the microbial communities thriving in these extreme environments becomes of utmost importance. These glaciers offer a unique perspective on extremophile adaptation, as they harbor microorganisms that are capable of surviving and thriving under harsh conditions. Glacial melting poses a significant threat to ancient microbiomes, potentially leading to the resurgence of epidemics and exposure of life to paleomicrobiota. Mostly glacial microbiome is evenly distributed and shows similar diversity. With the threat of resurrection of ages old microbiome and its incorporation into the waters have raised a major concern for revival of epidemics and exposure of life with paleanmicrobiota again. This has led the scientist to deeply observe the bacterial flora embedded in the cryonite holes of glaciers. This study aims to investigate the bacterial diversity within various glaciers of Pakistan using metagenomic techniques. Kamri, Burzil, Siachin, Baltoro, Shigar Basin, Biafo and Panama Glaciers designated from G1 to G7 respectively were chosen from Pakistan. Through rigorous physicochemical analyses, distinct characteristics among glaciers are revealed, including variations in temperature, depth, electrical conductivity, pH levels, and nutrient concentrations. The exploration of alpha diversity, employing metrics such as Chao1, Shannon, Simpson, and Inverse Simpson indices, offers valuable insights into the richness, evenness, and dominance of species within different samples. Beta diversity was calculated by using R software. The vegan package was used for NMSD, cluster and PCoA analysis based on Bray-Curtis distance. PCA analysis was done by using prcomp package from R software. Based on OTU abundance and environmental factor data, DCA analysis was done to determine the linear model from the gradient value (RDA) and the unimodal model (CCA). results were compiled by drawing cluster dendrogram which predicts the patterns of similarity and dissimilarity between different samples. Notably, phyla Proteobacteria emerge as the dominant phylum, accompanied by Actinobacteria, Firmicutes, and Bacteroidetes. The dendrogram shows five clusters, with close similarity between G1 and G4, glacier samples G3 and G8, and G2 and G7. Seasonal variations in glacier physicochemical properties were also observed, with summer samples having shallower depths, lower temperatures, and slightly acidic pH. In contrast, winter samples have higher electrical conductivity and sulfur content. Ultimately, this research provides a foundational framework for comprehending glacier ecosystems, their resident microbial communities, and their broader ecological significance. The study highlights the potential public health risks linked to the release of ancient microorganisms due to climate change, emphasizing the need for comprehensive monitoring and research to mitigate potential public health threats.

摘要

冰川由积雪堆积而成,在提供淡水资源、支持河流系统和维持生态系统稳定方面发挥着至关重要的作用。巴基斯坦是5000多条冰川的栖息地,主要分布在兴都库什山脉、喜马拉雅山脉和喀喇昆仑山脉。了解在这些极端环境中蓬勃生长的微生物群落变得至关重要。这些冰川为极端微生物的适应性提供了独特的视角,因为它们蕴藏着能够在恶劣条件下生存和繁衍的微生物。冰川融化对古老的微生物群落构成了重大威胁,可能导致流行病的再次爆发以及生命暴露于古微生物群中。大多数情况下,冰川微生物群落分布均匀且具有相似的多样性。随着古老微生物群落复苏并融入水体的威胁,引发了对流行病复苏以及生命再次暴露于古微生物群的重大担忧。这促使科学家深入观察冰川冰洞中嵌入的细菌群落。本研究旨在使用宏基因组技术调查巴基斯坦各条冰川内的细菌多样性。从巴基斯坦分别选取了命名为G1至G7的卡姆里冰川、布尔齐尔冰川、锡亚琴冰川、巴尔托洛冰川、希加尔盆地冰川、比阿佛冰川和巴拿马冰川。通过严格的理化分析,揭示了各条冰川之间的不同特征,包括温度、深度、电导率、pH值和营养浓度的变化。利用Chao1、香农、辛普森和反辛普森指数等指标对α多样性进行探索,为不同样本中物种的丰富度、均匀度和优势度提供了有价值的见解。β多样性通过R软件计算得出。使用vegan软件包基于布雷-柯蒂斯距离进行非度量多维尺度分析(NMSD)、聚类分析和主坐标分析(PCoA)。通过使用R软件的prcomp软件包进行主成分分析(PCA)。基于操作分类单元(OTU)丰度和环境因子数据,进行去趋势对应分析(DCA)以确定来自梯度值的线性模型(RDA)和单峰模型(CCA)。通过绘制聚类树状图汇总结果,该图预测了不同样本之间的相似性和差异性模式。值得注意的是,变形菌门成为优势菌门,其次是放线菌门、厚壁菌门和拟杆菌门。树状图显示有五个聚类,G1和G4、冰川样本G3和G8以及G2和G7之间相似度较高。还观察到了冰川理化性质的季节性变化,夏季样本深度较浅、温度较低且pH值略呈酸性。相比之下,冬季样本的电导率和硫含量较高。最终,这项研究为理解冰川生态系统、其栖息的微生物群落及其更广泛的生态意义提供了一个基础框架。该研究强调了气候变化导致古老微生物释放所带来的潜在公共卫生风险,强调需要进行全面监测和研究以减轻潜在的公共卫生威胁。

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