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新型伊胡米棒状杆菌的基因组序列及描述

Genome sequence and description of Corynebacterium ihumii sp. nov.

作者信息

Padmanabhan Roshan, Dubourg Grégory, Lagier Jean-Christophe, Couderc Carine, Michelle Caroline, Raoult Didier, Fournier Pierre-Edouard

机构信息

URMITE, UM63, CNRS7278, IRD198, Inserm1095, IHU Méditerranée-Infection, Aix-Marseille Université, Faculté de médecine, France.

URMITE, UM63, CNRS7278, IRD198, Inserm1095, IHU Méditerranée-Infection, Aix-Marseille Université, Faculté de médecine, France ; Special Unit Agents, King Fahd Medical Research Center, King Abdul Aziz University, Jeddah, Saudi Arabia.

出版信息

Stand Genomic Sci. 2014 Mar 15;9(3):1128-43. doi: 10.4056/sigs.5149006. eCollection 2014 Jun 15.

DOI:10.4056/sigs.5149006
PMID:25197488
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4149009/
Abstract

Corynebacterium ihumii strain GD7(T) sp. nov. is proposed as the type strain of a new species, which belongs to the family Corynebacteriaceae of the class Actinobacteria. This strain was isolated from the fecal flora of a 62 year-old male patient, as a part of the culturomics study. Corynebacterium ihumii is a Gram positive, facultativly anaerobic, nonsporulating bacillus. Here, we describe the features of this organism, together with the high quality draft genome sequence, annotation and the comparison with other member of the genus Corynebacteria. C. ihumii genome is 2,232,265 bp long (one chromosome but no plasmid) containing 2,125 protein-coding and 53 RNA genes, including 4 rRNA genes. The whole-genome shotgun sequence of Corynebacterium ihumii strain GD7(T) sp. nov has been deposited in EMBL under accession number GCA_000403725.

摘要

新种伊氏棒状杆菌GD7(T)被提议作为一个新物种的模式菌株，它属于放线菌纲棒状杆菌科。该菌株是从一名62岁男性患者的粪便菌群中分离得到的，作为宏基因组学研究的一部分。伊氏棒状杆菌是革兰氏阳性、兼性厌氧、无芽孢杆菌。在此，我们描述了该菌株的特征，以及高质量草图基因组序列、注释，并与棒状杆菌属的其他成员进行了比较。伊氏棒状杆菌基因组长度为2,232,265 bp（一条染色体，无质粒），包含2,125个蛋白质编码基因和53个RNA基因，其中包括4个rRNA基因。伊氏棒状杆菌GD7(T)新种的全基因组鸟枪法序列已保藏于EMBL，登录号为GCA_000403725。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/d0c046b65010/sigs.5149006-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/42274c966ece/sigs.5149006-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/37847b4b5f1f/sigs.5149006-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/f0a22b00edb9/sigs.5149006-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/99f8ae2ebd9b/sigs.5149006-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/07eeb36d303e/sigs.5149006-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/3ebb640aecec/sigs.5149006-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/d0c046b65010/sigs.5149006-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/42274c966ece/sigs.5149006-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/37847b4b5f1f/sigs.5149006-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/f0a22b00edb9/sigs.5149006-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/99f8ae2ebd9b/sigs.5149006-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/07eeb36d303e/sigs.5149006-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/3ebb640aecec/sigs.5149006-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49e8/4149009/d0c046b65010/sigs.5149006-f7.jpg

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