Harris Robert C, Pettitt B Montgomery
Department of Biochemistry and Molecular Biology, Department of Pharmacology and Toxicology, and Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555-0304.
Department of Biochemistry and Molecular Biology, Department of Pharmacology and Toxicology, and Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, TX 77555-0304
Proc Natl Acad Sci U S A. 2014 Oct 14;111(41):14681-6. doi: 10.1073/pnas.1406080111. Epub 2014 Sep 25.
Inserting an uncharged van der Waals (vdw) cavity into water disrupts the distribution of water and creates attractive dispersion interactions between the solvent and solute. This free-energy change is the hydrophobic solvation energy (ΔG(vdw)). Frequently, it is assumed to be linear in the solvent-accessible surface area, with a positive surface tension (γ) that is independent of the properties of the molecule. However, we found that γ for a set of alkanes differed from that for four configurations of decaalanine, and γ = -5 was negative for the decaalanines. These findings conflict with the notion that ΔG(vdw) favors smaller A. We broke ΔG(vdw) into the free energy required to exclude water from the vdw cavity (ΔG(rep)) and the free energy of forming the attractive interactions between the solute and solvent (ΔG(att)) and found that γ < 0 for the decaalanines because -γ(att) > γ(rep) and γ(att) < 0. Additionally, γ(att) and γ(rep) for the alkanes differed from those for the decaalanines, implying that none of ΔG(att), ΔG(rep), and ΔG(vdw) can be computed with a constant surface tension. We also showed that ΔG(att) could not be computed from either the initial or final water distributions, implying that this quantity is more difficult to compute than is sometimes assumed. Finally, we showed that each atom's contribution to γ(rep) depended on multibody interactions with its surrounding atoms, implying that these contributions are not additive. These findings call into question some hydrophobic models.
将一个不带电的范德华(vdw)空腔插入水中会扰乱水的分布,并在溶剂和溶质之间产生有吸引力的色散相互作用。这种自由能变化就是疏水溶剂化能(ΔG(vdw))。通常,人们认为它与溶剂可及表面积呈线性关系,具有一个与分子性质无关的正表面张力(γ)。然而,我们发现一组烷烃的γ与十聚丙氨酸的四种构型的γ不同,并且十聚丙氨酸的γ = -5为负值。这些发现与ΔG(vdw)有利于较小表面积的观点相矛盾。我们将ΔG(vdw)分解为将水从vdw空腔中排除所需的自由能(ΔG(rep))和溶质与溶剂之间形成吸引相互作用的自由能(ΔG(att)),并发现十聚丙氨酸的γ < 0是因为-γ(att) > γ(rep)且γ(att) < 0。此外,烷烃的γ(att)和γ(rep)与十聚丙氨酸的不同,这意味着ΔG(att)、ΔG(rep)和ΔG(vdw)都不能用恒定的表面张力来计算。我们还表明,ΔG(att)不能从初始或最终的水分布计算得出,这意味着这个量比有时所认为的更难计算。最后,我们表明每个原子对γ(rep)的贡献取决于与其周围原子的多体相互作用,这意味着这些贡献不是可加的。这些发现对一些疏水模型提出了质疑。