利用高速成像技术对F1-ATP合酶旋转催化进行的热力学分析。

Thermodynamic analysis of F1-ATPase rotary catalysis using high-speed imaging.

作者信息

Watanabe Rikiya, Minagawa Yoshihiro, Noji Hiroyuki

机构信息

Department of Applied Chemistry, School of Engineering, The University of Tokyo, Bunkyo-ku, Tokyo, 113-8656, Japan; PRESTO, JST, Bunkyo-ku, Tokyo, 113-8656, Japan.

出版信息

Protein Sci. 2014 Dec;23(12):1773-9. doi: 10.1002/pro.2559. Epub 2014 Oct 21.

Abstract

F1-ATPase (F1) is a rotary motor protein fueled by ATP hydrolysis. Although the mechanism for coupling rotation and catalysis has been well studied, the molecular details of individual reaction steps remain elusive. In this study, we performed high-speed imaging of F1 rotation at various temperatures using the total internal reflection dark-field (TIRDF) illumination system, which allows resolution of the F1 catalytic reaction into elementary reaction steps with a high temporal resolution of 72 µs. At a high concentration of ATP, F1 rotation comprised distinct 80° and 40° substeps. The 80° substep, which exhibited significant temperature dependence, is triggered by the temperature-sensitive reaction, whereas the 40° substep is triggered by ATP hydrolysis and the release of inorganic phosphate (Pi). Then, we conducted Arrhenius analysis of the reaction rates to obtain the thermodynamic parameters for individual reaction steps, that is, ATP binding, ATP hydrolysis, Pi release, and TS reaction. Although all reaction steps exhibited similar activation free energy values, ΔG(‡) = 53-56 kJ mol(-1), the contributions of the enthalpy (ΔH(‡)), and entropy (ΔS(‡)) terms were significantly different; the reaction steps that induce tight subunit packing, for example, ATP binding and TS reaction, showed high positive values of both ΔH(‡) and ΔS(‡). The results may reflect modulation of the excluded volume as a function of subunit packing tightness at individual reaction steps, leading to a gain or loss in water entropy.

摘要

F1 - ATP酶(F1)是一种由ATP水解提供能量的旋转马达蛋白。尽管旋转与催化偶联的机制已得到充分研究,但各个反应步骤的分子细节仍不清楚。在本研究中,我们使用全内反射暗场(TIRDF)照明系统在不同温度下对F1旋转进行了高速成像,该系统能够以72微秒的高时间分辨率将F1催化反应解析为基本反应步骤。在高浓度ATP条件下,F1旋转包含明显的80°和40°子步。80°子步表现出显著的温度依赖性,由温度敏感反应触发,而40°子步由ATP水解和无机磷酸(Pi)释放触发。然后,我们对反应速率进行了阿伦尼乌斯分析,以获得各个反应步骤的热力学参数,即ATP结合、ATP水解、Pi释放和温度敏感反应。尽管所有反应步骤都表现出相似的活化自由能值,ΔG(‡)=53 - 56 kJ·mol⁻¹,但焓(ΔH(‡))和熵(ΔS(‡))项的贡献显著不同;例如,诱导亚基紧密堆积的反应步骤,ATP结合和温度敏感反应,显示出ΔH(‡)和ΔS(‡)的高正值。结果可能反映了在各个反应步骤中作为亚基堆积紧密程度函数的排除体积的调制,导致水熵的增加或减少。

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