Salsi Enea, Farah Elie, Dann Jillian, Ermolenko Dmitri N
Department of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642.
Department of Biochemistry and Biophysics and Center for RNA Biology, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642
Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15060-5. doi: 10.1073/pnas.1410873111. Epub 2014 Oct 6.
Translocation of mRNA and tRNAs through the ribosome is catalyzed by a universally conserved elongation factor (EF-G in prokaryotes and EF-2 in eukaryotes). Previous studies have suggested that ribosome-bound EF-G undergoes significant structural rearrangements. Here, we follow the movement of domain IV of EF-G, which is critical for the catalysis of translocation, relative to protein S12 of the small ribosomal subunit using single-molecule FRET. We show that ribosome-bound EF-G adopts distinct conformations corresponding to the pre- and posttranslocation states of the ribosome. Our results suggest that, upon ribosomal translocation, domain IV of EF-G moves toward the A site of the small ribosomal subunit and facilitates the movement of peptidyl-tRNA from the A to the P site. We found no evidence of direct coupling between the observed movement of domain IV of EF-G and GTP hydrolysis. In addition, our results suggest that the pretranslocation conformation of the EF-G-ribosome complex is significantly less stable than the posttranslocation conformation. Hence, the structural rearrangement of EF-G makes a considerable energetic contribution to promoting tRNA translocation.
信使核糖核酸(mRNA)和转运核糖核酸(tRNA)通过核糖体的易位过程由一种普遍保守的延伸因子催化(原核生物中为EF-G,真核生物中为EF-2)。先前的研究表明,结合在核糖体上的EF-G会发生显著的结构重排。在此,我们利用单分子荧光共振能量转移技术,追踪EF-G的结构域IV相对于小核糖体亚基的蛋白质S12的运动,该结构域对易位催化至关重要。我们发现,结合在核糖体上的EF-G呈现出与核糖体易位前和易位后状态相对应的不同构象。我们的结果表明,在核糖体易位时,EF-G的结构域IV向小核糖体亚基的A位点移动,并促进肽基-tRNA从A位点向P位点的移动。我们没有发现EF-G结构域IV的观察到的运动与鸟苷三磷酸(GTP)水解之间存在直接偶联的证据。此外,我们的结果表明,EF-G-核糖体复合物的易位前构象比易位后构象的稳定性显著更低。因此,EF-G的结构重排对促进tRNA易位做出了相当大的能量贡献。