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加权二分网络的聚类分析:一种基于新的Copula函数的方法。

Cluster analysis of weighted bipartite networks: a new copula-based approach.

作者信息

Chessa Alessandro, Crimaldi Irene, Riccaboni Massimo, Trapin Luca

机构信息

IMT Institute for Advanced Studies, Lucca, Italy.

出版信息

PLoS One. 2014 Oct 10;9(10):e109507. doi: 10.1371/journal.pone.0109507. eCollection 2014.

DOI:10.1371/journal.pone.0109507
PMID:25303095
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4193785/
Abstract

In this work we are interested in identifying clusters of "positional equivalent" actors, i.e. actors who play a similar role in a system. In particular, we analyze weighted bipartite networks that describes the relationships between actors on one side and features or traits on the other, together with the intensity level to which actors show their features. We develop a methodological approach that takes into account the underlying multivariate dependence among groups of actors. The idea is that positions in a network could be defined on the basis of the similar intensity levels that the actors exhibit in expressing some features, instead of just considering relationships that actors hold with each others. Moreover, we propose a new clustering procedure that exploits the potentiality of copula functions, a mathematical instrument for the modelization of the stochastic dependence structure. Our clustering algorithm can be applied both to binary and real-valued matrices. We validate it with simulations and applications to real-world data.

摘要

在这项工作中,我们感兴趣的是识别“位置等效”参与者的集群,即那些在系统中扮演类似角色的参与者。具体而言,我们分析加权二分网络,该网络描述了一方参与者与另一方特征或特质之间的关系,以及参与者展现其特征的强度水平。我们开发了一种方法,该方法考虑了参与者群体之间潜在的多变量依赖性。其理念是,网络中的位置可以基于参与者在表达某些特征时展现出的相似强度水平来定义,而不仅仅是考虑参与者之间的关系。此外,我们提出了一种新的聚类程序,该程序利用了Copula函数的潜力,Copula函数是一种用于随机依赖结构建模的数学工具。我们的聚类算法可应用于二元矩阵和实值矩阵。我们通过模拟和对实际数据的应用来验证它。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/a3dea24b0072/pone.0109507.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/0124861145bf/pone.0109507.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/660d1986f0fa/pone.0109507.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/44e677d5f9d2/pone.0109507.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/a3dea24b0072/pone.0109507.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/0124861145bf/pone.0109507.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/660d1986f0fa/pone.0109507.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/44e677d5f9d2/pone.0109507.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3e6/4193785/a3dea24b0072/pone.0109507.g004.jpg

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本文引用的文献

1
World Input-Output Network.世界投入产出网络
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2
The rise of China in the International Trade Network: a community core detection approach.中国在国际贸易网络中的崛起:一种社区核心检测方法。
PLoS One. 2014 Aug 19;9(8):e105496. doi: 10.1371/journal.pone.0105496. eCollection 2014.
3
Efficiently inferring community structure in bipartite networks.高效推断二分网络中的社区结构。
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jul;90(1):012805. doi: 10.1103/PhysRevE.90.012805. Epub 2014 Jul 10.
4
Network communities within and across borders.国界内外的网络社区。
Sci Rep. 2014 Apr 1;4:4546. doi: 10.1038/srep04546.
5
A network approach to analyzing highly recombinant malaria parasite genes.一种分析高度重组疟原虫基因的网络方法。
PLoS Comput Biol. 2013;9(10):e1003268. doi: 10.1371/journal.pcbi.1003268. Epub 2013 Oct 10.
6
Multitasking associative networks.多重任务关联网络。
Phys Rev Lett. 2012 Dec 28;109(26):268101. doi: 10.1103/PhysRevLett.109.268101. Epub 2012 Dec 26.
7
Performance of modularity maximization in practical contexts.模块化最大化在实际环境中的性能。
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Apr;81(4 Pt 2):046106. doi: 10.1103/PhysRevE.81.046106. Epub 2010 Apr 15.
8
Modularity and community detection in bipartite networks.二分网络中的模块化与社区检测
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Dec;76(6 Pt 2):066102. doi: 10.1103/PhysRevE.76.066102. Epub 2007 Dec 7.
9
Bipartite network projection and personal recommendation.二分网络投影与个性化推荐。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Oct;76(4 Pt 2):046115. doi: 10.1103/PhysRevE.76.046115. Epub 2007 Oct 25.
10
Module identification in bipartite and directed networks.二分网络和有向网络中的模块识别。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):036102. doi: 10.1103/PhysRevE.76.036102. Epub 2007 Sep 6.