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土壤酸杆菌16S rRNA基因序列揭示了类似稀树草原的塞拉多和巴西大西洋森林生物群落之间的亚组水平差异。

Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes.

作者信息

Catão Elisa C P, Lopes Fabyano A C, Araújo Janaína F, de Castro Alinne P, Barreto Cristine C, Bustamante Mercedes M C, Quirino Betania F, Krüger Ricardo H

机构信息

Cellular Biology Department, Instituto Central de Ciências Sul, Universidade de Brasília (UnB), 700910-900 Brasília, DF, Brazil.

Genomic Sciences and Biotechnology, Universidade Católica de Brasília, 70790-160 Brasília, DF, Brazil.

出版信息

Int J Microbiol. 2014;2014:156341. doi: 10.1155/2014/156341. Epub 2014 Sep 15.

DOI:10.1155/2014/156341
PMID:25309599
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4181792/
Abstract

16S rRNA sequences from the phylum Acidobacteria have been commonly reported from soil microbial communities, including those from the Brazilian Savanna (Cerrado) and the Atlantic Forest biomes, two biomes that present contrasting characteristics of soil and vegetation. Using 16S rRNA sequences, the present work aimed to study acidobacterial diversity and distribution in soils of Cerrado savanna and two Atlantic forest sites. PCA and phylogenetic reconstruction showed that the acidobacterial communities found in "Mata de galeria" forest soil samples from the Cerrado biome have a tendency to separate from the other Cerrado vegetation microbial communities in the direction of those found in the Atlantic Forest, which is correlated with a high abundance of Acidobacteria subgroup 2 (GP2). Environmental conditions seem to promote a negative correlation between GP2 and subgroup 1 (GP1) abundance. Also GP2 is negatively correlated to pH, but positively correlated to high Al(3+) concentrations. The Cerrado soil showed the lowest Acidobacteria richness and diversity indexes of OTUs at the species and subgroups levels when compared to Atlantic Forest soils. These results suggest specificity of acidobacterial subgroups to soils of different biomes and are a starting point to understand their ecological roles, a topic that needs to be further explored.

摘要

酸性菌门的16S rRNA序列在土壤微生物群落中普遍存在,包括来自巴西热带稀树草原(塞拉多)和大西洋森林生物群落的土壤微生物群落,这两个生物群落呈现出土壤和植被的对比特征。本研究利用16S rRNA序列,旨在研究塞拉多稀树草原和两个大西洋森林地区土壤中酸性菌的多样性和分布。主成分分析(PCA)和系统发育重建表明,在塞拉多生物群落的“画廊森林”土壤样本中发现的酸性菌群落,有朝着在大西洋森林中发现的群落方向,与其他塞拉多植被微生物群落分离的趋势,这与酸性菌2亚组(GP2)的高丰度相关。环境条件似乎促进了GP2与1亚组(GP1)丰度之间的负相关。此外,GP2与pH呈负相关,但与高浓度的Al(3+)呈正相关。与大西洋森林土壤相比,塞拉多土壤在物种和亚组水平上显示出最低的酸性菌丰富度和OTU多样性指数。这些结果表明酸性菌亚组对不同生物群落土壤具有特异性,是理解其生态作用的起点,这一主题有待进一步探索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/9e7f2197fc52/IJMICRO2014-156341.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/524da1eea235/IJMICRO2014-156341.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/0ec3ce52778a/IJMICRO2014-156341.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/3ad075fccd16/IJMICRO2014-156341.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/1ccac238864f/IJMICRO2014-156341.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/9e765b57a2d4/IJMICRO2014-156341.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/9e7f2197fc52/IJMICRO2014-156341.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/524da1eea235/IJMICRO2014-156341.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/0ec3ce52778a/IJMICRO2014-156341.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/3ad075fccd16/IJMICRO2014-156341.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/1ccac238864f/IJMICRO2014-156341.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/9e765b57a2d4/IJMICRO2014-156341.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0e8/4181792/9e7f2197fc52/IJMICRO2014-156341.006.jpg

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