分枝杆菌噬菌体的分子遗传学
Molecular Genetics of Mycobacteriophages.
作者信息
Hatfull Graham F
机构信息
Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260.
出版信息
Microbiol Spectr. 2014 Mar 7;2(2):1-36.
Abstract
Mycobacteriophages have provided numerous essential tools for mycobacterial genetics, including delivery systems for transposons, reporter genes, and allelic exchange substrates, and components for plasmid vectors and mutagenesis. Their genetically diverse genomes also reveal insights into the broader nature of the phage population and the evolutionary mechanisms that give rise to it. The substantial advances in our understanding of the biology of mycobacteriophages including a large collection of completely sequenced genomes indicates a rich potential for further contributions in tuberculosis genetics and beyond.
摘要
分枝杆菌噬菌体为分枝杆菌遗传学提供了众多重要工具，包括转座子、报告基因和等位基因交换底物的递送系统，以及质粒载体和诱变的组件。它们基因多样的基因组还揭示了对噬菌体群体更广泛本质以及产生该群体的进化机制的见解。我们对分枝杆菌噬菌体生物学的理解取得了重大进展，包括大量完全测序的基因组，这表明其在结核病遗传学及其他领域有进一步贡献的巨大潜力。
相似文献
1
Molecular Genetics of Mycobacteriophages.分枝杆菌噬菌体的分子遗传学
Microbiol Spectr. 2014 Mar 7;2(2):1-36.
2
Molecular Genetics of Mycobacteriophages.分枝杆菌噬菌体的分子遗传学
Microbiol Spectr. 2014 Apr;2(2). doi: 10.1128/microbiolspec.MGM2-0032-2013.
3
Mycobacteriophages: From Petri dish to patient.分枝杆菌噬菌体：从培养皿到患者。
PLoS Pathog. 2022 Jul 7;18(7):e1010602. doi: 10.1371/journal.ppat.1010602. eCollection 2022 Jul.
4
Fluorescent Reporter DS6A Mycobacteriophages Reveal Unique Variations in Infectibility and Phage Production in Mycobacteria.荧光报告噬菌体DS6A揭示分枝杆菌感染性和噬菌体产生的独特差异
J Bacteriol. 2016 Nov 4;198(23):3220-3232. doi: 10.1128/JB.00592-16. Print 2016 Dec 1.
5
The secret lives of mycobacteriophages.分枝杆菌噬菌体的秘密生活。
Adv Virus Res. 2012;82:179-288. doi: 10.1016/B978-0-12-394621-8.00015-7.
6
Mycobacteriophages: genes and genomes.分枝杆菌噬菌体：基因与基因组。
Annu Rev Microbiol. 2010;64:331-56. doi: 10.1146/annurev.micro.112408.134233.
7
Recombineering mycobacteria and their phages.重组工程改造分枝杆菌及其噬菌体。
Nat Rev Microbiol. 2008 Nov;6(11):851-7. doi: 10.1038/nrmicro2014.
8
The Protein Interactome of Mycobacteriophage Giles Predicts Functions for Unknown Proteins.分枝杆菌噬菌体贾尔斯的蛋白质相互作用组预测未知蛋白质的功能。
J Bacteriol. 2015 Aug 1;197(15):2508-16. doi: 10.1128/JB.00164-15. Epub 2015 May 18.
9
Protein-Mediated and RNA-Based Origins of Replication of Extrachromosomal Mycobacterial Prophages.蛋白质介导和基于 RNA 的染色体外分枝杆菌噬菌体复制起点。
mBio. 2020 Mar 24;11(2):e00385-20. doi: 10.1128/mBio.00385-20.
10
Mycobacteriophages as Incubators for Intein Dissemination and Evolution.分枝杆菌噬菌体作为内含肽传播与进化的“孵化器”
mBio. 2016 Oct 4;7(5):e01537-16. doi: 10.1128/mBio.01537-16.
引用本文的文献
1
Complete Genome Sequences of Four Mycobacteriophages Involved in Directed Evolution against Undisputed Clinical Strains.四种参与针对明确临床菌株进行定向进化的分枝杆菌噬菌体的全基因组序列
Microorganisms. 2024 Feb 11;12(2):374. doi: 10.3390/microorganisms12020374.
2
Bacteriophage Taxonomy: A Continually Evolving Discipline.噬菌体分类学：一门不断发展的学科。
Methods Mol Biol. 2024;2734:27-45. doi: 10.1007/978-1-0716-3523-0_3.
3
Genome sequence of BM cluster phage Frankenweenie.BM簇噬菌体科学怪人（Frankenweenie）的基因组序列。
Microbiol Resour Announc. 2023 Nov 16;12(11):e0059223. doi: 10.1128/MRA.00592-23. Epub 2023 Oct 13.
4
Therapeutically useful mycobacteriophages BPs and Muddy require trehalose polyphleates.治疗性有用分枝杆菌噬菌体 BP 和 Muddy 需要海藻糖多聚体。
Nat Microbiol. 2023 Sep;8(9):1717-1731. doi: 10.1038/s41564-023-01451-6. Epub 2023 Aug 24.
5
Mycobacteriophage Rita: a cluster F1 phage discovered in North Easton, Massachusetts.分枝杆菌噬菌体丽塔：一种在马萨诸塞州东北镇发现的F1簇噬菌体。
Microbiol Resour Announc. 2023 Sep 19;12(9):e0051023. doi: 10.1128/MRA.00510-23. Epub 2023 Aug 28.
6
Bacteriophages of Mycobacterium tuberculosis, their diversity, and potential therapeutic uses: a review.结核分枝杆菌噬菌体及其多样性和潜在的治疗用途：综述。
BMC Infect Dis. 2022 Dec 22;22(1):957. doi: 10.1186/s12879-022-07944-9.
7
Nontuberculous Mycobacteria as Sapronoses: A Review.非结核分枝杆菌作为腐物寄生菌病：综述
Microorganisms. 2022 Jul 3;10(7):1345. doi: 10.3390/microorganisms10071345.
8
Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages.聚类 K 分枝杆菌噬菌体之间的系统发育关系和密码子使用偏性。
G3 (Bethesda). 2021 Oct 19;11(11). doi: 10.1093/g3journal/jkab291.
9
Complete Genome Sequence of the Cluster B4 Mycobacteriophage Lolalove, Isolated in Charleston, South Carolina.从南卡罗来纳州查尔斯顿分离出的B4群分枝杆菌噬菌体Lolalove的全基因组序列
Microbiol Resour Announc. 2021 Jul;10(26):e0049321. doi: 10.1128/MRA.00493-21. Epub 2021 Jul 1.
10
Complete Genome Sequences of Mycobacteriophages HarryOW and Peeb.分枝杆菌噬菌体HarryOW和Peeb的全基因组序列
Microbiol Resour Announc. 2021 Apr 8;10(14):e00112-21. doi: 10.1128/MRA.00112-21.
本文引用的文献
1
Gene Transfer in Mycobacterium tuberculosis: Shuttle Phasmids to Enlightenment.结核分枝杆菌中的基因转移：穿梭质粒带来的启示。
Microbiol Spectr. 2014 Apr;2(2). doi: 10.1128/microbiolspec.MGM2-0037-2013.
2
Genetics of Phage Lysis.噬菌体裂解的遗传学。
Microbiol Spectr. 2014 Feb;2(1):MGM2-0017-2013. doi: 10.1128/microbiolspec.MGM2-0017-2013.
3
Evolutionary relationships among actinophages and a putative adaptation for growth in Streptomyces spp.放线噬菌体之间的进化关系及在链霉菌属中生长的潜在适应性
J Bacteriol. 2013 Nov;195(21):4924-35. doi: 10.1128/JB.00618-13. Epub 2013 Aug 30.
4
Cluster J mycobacteriophages: intron splicing in capsid and tail genes.丛集 J 分枝杆菌噬菌体：衣壳和尾部基因中的内含子剪接。
PLoS One. 2013 Jul 9;8(7):e69273. doi: 10.1371/journal.pone.0069273. Print 2013.
5
Generation of affinity-tagged fluoromycobacteriophages by mixed assembly of phage capsids.通过噬菌体衣壳的混合组装生成亲和标签荧光分枝杆菌噬菌体。
Appl Environ Microbiol. 2013 Sep;79(18):5608-15. doi: 10.1128/AEM.01016-13. Epub 2013 Jul 12.
6
Evolution of genetic switch complexity.基因开关复杂性的演变。
Bacteriophage. 2013 Jan 1;3(1):e24186. doi: 10.4161/bact.24186.
7
The first structure of a mycobacteriophage, the Mycobacterium abscessus subsp. bolletii phage Araucaria.分枝杆菌噬菌体的首个结构，脓肿分枝杆菌亚种 Araucaria 噬菌体。
J Virol. 2013 Jul;87(14):8099-109. doi: 10.1128/JVI.01209-13. Epub 2013 May 15.
8
Application of BRED technology to construct recombinant D29 reporter phage expressing EGFP.应用 BRED 技术构建表达 EGFP 的重组 D29 报告噬菌体。
FEMS Microbiol Lett. 2013 Jul;344(2):166-72. doi: 10.1111/1574-6968.12171. Epub 2013 Jun 3.
9
Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles.噬菌体生长的功能需求：分枝杆菌噬菌体 Giles 中的基因必需性和表达。
Mol Microbiol. 2013 May;88(3):577-89. doi: 10.1111/mmi.12210. Epub 2013 Apr 8.
10
Amplifying genetic logic gates.基因逻辑门放大。
Science. 2013 May 3;340(6132):599-603. doi: 10.1126/science.1232758. Epub 2013 Mar 28.
Zotero 插件