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海生明视杆菌新属新种,一种从表层海水中分离出的半透明细菌,兼对新科砂栖菌科及新目砂栖菌目进行描述

Perspicuibacter marinus gen. nov., sp. nov., a semi-transparent bacterium isolated from surface seawater, and description of Arenicellaceae fam. nov. and Arenicellales ord. nov.

作者信息

Teramoto Maki, Yagyu Ken-Ichi, Nishijima Miyuki

机构信息

Oceanography Section, Kochi University, Kohasu, Oko, Nankoku, Kochi 783-8505, Japan.

The Facility for Research Instruments, Kochi University, Kohasu, Oko, Nankoku, Kochi 783-8505, Japan.

出版信息

Int J Syst Evol Microbiol. 2015 Feb;65(Pt 2):353-358. doi: 10.1099/ijs.0.064683-0. Epub 2014 Oct 29.

Abstract

A Gram-stain-negative, non-motile, mesophilic, aerobic, rod-shaped bacterium, strain 2-9(T), was isolated from surface seawater at Muroto city, Kochi prefecture, Japan. The strain was transparent on 1/5 strength marine broth plate but became easily visible when the plate was supplemented with pyruvate. Phylogenetic analyses based on the 16S rRNA gene sequence showed that the strain fell within the class Gammaproteobacteria and was most closely related to the genus Arenicella (92.7-93.0 % 16S rRNA gene sequence similarities to type strains of species of this genus) of an unclassified order within this class. The DNA G+C content of strain 2-9(T) was 41.7 mol%. The major fatty acids were C18 : 1ω7c (37.6 %), C16 : 1ω7c and/or iso-C15 : 0 2-OH (summed feature 3; 19.1 %), C18 : 0 (10.8 %), C16 : 0 (10.2 %) and an unidentified fatty acid with an equivalent chain-length value of 11.799 (9.5 %). The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine and three unidentified lipids. Ubiquinone-8 (Q-8) was detected as the sole isoprenoid quinone. From these taxonomic data, it is proposed that strain 2-9(T) represents a novel species of a new genus, Perspicuibacter marinus gen. nov., sp. nov. The type strain of the type species is 2-9(T) ( = NBRC 110144(T) = KCTC 42196(T)). A new family, Arenicellaceae fam. nov. (type genus Arenicella), and order, Arenicellales ord. nov., of the class Gammaproteobacteria are proposed to accommodate the novel taxon.

摘要

从日本高知县室户市的表层海水中分离出一株革兰氏染色阴性、不运动、嗜温、需氧的杆状细菌,菌株2-9(T)。该菌株在1/5强度的海洋肉汤平板上是透明的,但当平板中添加丙酮酸时就很容易观察到。基于16S rRNA基因序列的系统发育分析表明,该菌株属于γ-变形菌纲,与未分类目内的Arenicella属关系最为密切(与该属模式菌株的16S rRNA基因序列相似性为92.7-93.0%)。菌株2-9(T)的DNA G+C含量为41.7 mol%。主要脂肪酸为C18 : 1ω7c(37.6%)、C16 : 1ω7c和/或异-C15 : 0 2-OH(总和特征3;19.1%)、C18 : 0(10.8%)、C16 : 0(10.2%)以及一种等效链长值为11.799的未鉴定脂肪酸(9.5%)。主要极性脂为磷脂酰甘油、磷脂酰乙醇胺和三种未鉴定的脂类。检测到泛醌-8(Q-8)为唯一的类异戊二烯醌。根据这些分类学数据,提议菌株2-9(T)代表一个新属Perspicuibacter marinus gen. nov.(海显菌属)的一个新物种,即海显菌Perspicuibacter marinus sp. nov.。模式种的模式菌株为2-9(T)(= NBRC 110144(T)= KCTC 42196(T))。提议建立一个γ-变形菌纲的新科Arenicellaceae fam. nov.(模式属为Arenicella)和新目Arenicellales ord. nov.来容纳这个新分类单元。

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