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温泉宏基因组学。

Hot spring metagenomics.

机构信息

Departamento de Bioloxía Celular e Molecular, Facultade de Ciencias, Universidade da Coruña, 15071 A Coruña, Spain.

出版信息

Life (Basel). 2013 Apr 25;3(2):308-20. doi: 10.3390/life3020308.

Abstract

Hot springs have been investigated since the XIX century, but isolation and examination of their thermophilic microbial inhabitants did not start until the 1950s. Many thermophilic microorganisms and their viruses have since been discovered, although the real complexity of thermal communities was envisaged when research based on PCR amplification of the 16S rRNA genes arose. Thereafter, the possibility of cloning and sequencing the total environmental DNA, defined as metagenome, and the study of the genes rescued in the metagenomic libraries and assemblies made it possible to gain a more comprehensive understanding of microbial communities-their diversity, structure, the interactions existing between their components, and the factors shaping the nature of these communities. In the last decade, hot springs have been a source of thermophilic enzymes of industrial interest, encouraging further study of the poorly understood diversity of microbial life in these habitats.

摘要

温泉的研究可以追溯到 19 世纪,但直到 20 世纪 50 年代才开始对其嗜热微生物居民进行分离和检查。自那时以来,已经发现了许多嗜热微生物及其病毒,尽管当基于聚合酶链反应(PCR)扩增 16S rRNA 基因的研究出现时,人们才开始设想热区群落的真正复杂性。此后,通过克隆和测序总环境 DNA(定义为宏基因组),以及对宏基因组文库和组装中回收的基因进行研究,人们得以更全面地了解微生物群落——它们的多样性、结构、组成部分之间的相互作用,以及塑造这些群落性质的因素。在过去的十年中,温泉是具有工业应用前景的嗜热酶的来源,这促使人们进一步研究这些栖息地中微生物生命的多样性。

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6
Biogeography of bacterial communities in hot springs: a focus on the actinobacteria.
Extremophiles. 2012 Jul;16(4):669-79. doi: 10.1007/s00792-012-0465-9. Epub 2012 Jun 19.
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PLoS One. 2012;7(6):e38371. doi: 10.1371/journal.pone.0038371. Epub 2012 Jun 4.
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Coordinating environmental genomics and geochemistry reveals metabolic transitions in a hot spring ecosystem.
PLoS One. 2012;7(6):e38108. doi: 10.1371/journal.pone.0038108. Epub 2012 Jun 4.

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