Zablocki Olivier, van Zyl Leonardo, Trindade Marla
Department of Microbiology, The Ohio State University, Columbus, OH, USA.
Institute for Microbial Biotechnology and Metagenomics, University of the Western Cape, Bellville, South Africa.
Extremophiles. 2018 Nov;22(6):827-837. doi: 10.1007/s00792-018-1052-5. Epub 2018 Aug 18.
Bacterial viruses ("phages") play important roles in the regulation and evolution of microbial communities in most ecosystems. Terrestrial hot springs typically contain thermophilic bacterial communities, but the diversity and impacts of its associated viruses ("thermophilic phages") are largely unexplored. Here, we provide a taxonomic overview of phages that have been isolated strictly from terrestrial hot springs around the world. In addition, we placed 17 thermophilic phage genomes in a global phylogenomic context to detect evolutionary patterns. Thermophilic phages have diverse morphologies (e.g., tailed, filamentous), unique virion structures (e.g., extremely long tailed siphoviruses), and span five taxonomic families encompassing strictly thermophilic phage genera. Within the phage proteomic tree, six thermophilic phage-related clades were identified, with evident genomic relatedness between thermophilic phages and archaeal viruses. Moreover, whole proteome analyses showed clustering between phages that infect distinct host phyla, such as Firmicutes and Deinococcus-Thermus. The potential for discovery of novel phage-host systems in terrestrial hot springs remain mostly untapped, thus additional emphasis on thermophilic phages in ecological prospecting is encouraged to gain insights into the microbial population dynamics of these environments.
细菌病毒(“噬菌体”)在大多数生态系统中微生物群落的调控和进化中发挥着重要作用。陆地温泉通常含有嗜热细菌群落,但其相关病毒(“嗜热噬菌体”)的多样性和影响在很大程度上尚未得到探索。在此,我们提供了从世界各地陆地温泉中严格分离出的噬菌体的分类学概述。此外,我们将17个嗜热噬菌体基因组置于全球系统发育背景下以检测进化模式。嗜热噬菌体具有多样的形态(如尾状、丝状)、独特的病毒粒子结构(如极长尾的肌尾噬菌体),并跨越五个分类科,涵盖严格嗜热的噬菌体属。在噬菌体蛋白质组树中,鉴定出六个与嗜热噬菌体相关的进化枝,嗜热噬菌体与古菌病毒之间存在明显的基因组相关性。此外,全蛋白质组分析表明,感染不同宿主门(如厚壁菌门和嗜热放线菌门)的噬菌体之间存在聚类。在陆地温泉中发现新型噬菌体 - 宿主系统的潜力大多尚未开发,因此鼓励在生态勘探中更多地关注嗜热噬菌体,以深入了解这些环境中的微生物种群动态。