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从海洋沉积物中分离出的专性甲基营养型产甲烷菌——甲基营养型甲烷球菌的基因组序列草图

Draft Genome Sequence of an Obligately Methylotrophic Methanogen, Methanococcoides methylutens, Isolated from Marine Sediment.

作者信息

Guan Yue, Ngugi David K, Blom Jochen, Ali Shahjahan, Ferry James G, Stingl Ulrich

机构信息

Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Justus-Liebig-Universität Giessen, Bioinformatik und Systembiologie, Giessen, Germany.

出版信息

Genome Announc. 2014 Nov 20;2(6):e01184-14. doi: 10.1128/genomeA.01184-14.

DOI:10.1128/genomeA.01184-14
PMID:25414501
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4239356/
Abstract

Methanococcoides methylutens, the type species of the genus Methanococcoides, is a slightly halophilic methanogenic archaeon with a methylotrophic metabolism. Here, we present the annotated draft genome sequence of M. methylutens, which comprises 2,508,511 bp with 2,482 coding sequences, 51 tRNA genes, and a G+C content of 42.5%.

摘要

甲基营养甲烷球菌（Methanococcoides methylutens）是甲烷球菌属（Methanococcoides）的模式种，是一种具有甲基营养代谢的轻度嗜盐产甲烷古菌。在此，我们展示了甲基营养甲烷球菌的注释草图基因组序列，其包含2,508,511碱基对，有2,482个编码序列、51个tRNA基因，G+C含量为42.5%。

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本文引用的文献

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Methanococcoides vulcani sp. nov., a marine methylotrophic methanogen that uses betaine, choline and N,N-dimethylethanolamine for methanogenesis, isolated from a mud volcano, and emended description of the genus Methanococcoides.沃氏甲烷球菌（Methanococcoides vulcani）sp. nov.，一种海洋甲基营养型产甲烷菌，能够利用甜菜碱、胆碱和 N,N-二甲基乙醇胺进行产甲烷作用，从泥火山中分离得到，并对甲烷球菌属的描述进行了修正。
Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):1978-1983. doi: 10.1099/ijs.0.058289-0. Epub 2014 Mar 10.
2
INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.INDIGO-来自红海极端微生物的微生物基因组综合数据仓库。
PLoS One. 2013 Dec 6;8(12):e82210. doi: 10.1371/journal.pone.0082210. eCollection 2013.
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Glycine betaine as a direct substrate for methanogens (Methanococcoides spp.).甘氨酸甜菜碱作为产甲烷菌（Methanococcoides spp.）的直接底物。
Appl Environ Microbiol. 2014 Jan;80(1):289-93. doi: 10.1128/AEM.03076-13. Epub 2013 Oct 25.
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Choline and N,N-dimethylethanolamine as direct substrates for methanogens.胆碱和 N,N-二甲基乙醇胺可作为产甲烷菌的直接底物。
Appl Environ Microbiol. 2012 Dec;78(23):8298-303. doi: 10.1128/AEM.01941-12. Epub 2012 Sep 21.
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