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Illumina对RsrA的鉴定,RsrA是一种保守的C2H2转录因子,在曲霉中协调NapA介导的氧化应激信号通路。

Illumina identification of RsrA, a conserved C2H2 transcription factor coordinating the NapA mediated oxidative stress signaling pathway in Aspergillus.

作者信息

Bok Jin Woo, Wiemann Philipp, Garvey Graeme S, Lim Fang Yun, Haas Brian, Wortman Jennifer, Keller Nancy P

机构信息

Department of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.

出版信息

BMC Genomics. 2014 Nov 22;15(1):1011. doi: 10.1186/1471-2164-15-1011.

Abstract

BACKGROUND

Chemical mutagenesis screens are useful to identify mutants involved in biological processes of interest. Identifying the mutation from such screens, however, often fails when using methodologies involving transformation of the mutant to wild type phenotype with DNA libraries.

RESULTS

Here we analyzed Illumina sequence of a chemically derived mutant of Aspergillus nidulans and identified a gene encoding a C2H2 transcription factor termed RsrA for regulator of stress response. RsrA is conserved in filamentous fungal genomes, and upon deleting the gene in three Aspergillus species (A. nidulans, A. flavus and A. fumigatus), we found two conserved phenotypes: enhanced resistance to oxidative stress and reduction in sporulation processes. For all species, rsrA deletion mutants were more resistant to hydrogen peroxide treatment. In depth examination of this latter characteristic in A. nidulans showed that upon exposure to hydrogen peroxide, RsrA loss resulted in global up-regulation of several components of the oxidative stress metabolome including the expression of napA and atfA, the two bZIP transcription factors mediating resistance to reactive oxygen species (ROS) as well as NapA targets in thioredoxin and glutathione systems. Coupling transcriptional data with examination of ΔrsrAΔatfA and ΔrsrAΔnapA double mutants indicate that RsrA primarily operates through NapA-mediated stress response pathways. A model of RsrA regulation of ROS response in Aspergillus is presented.

CONCLUSION

RsrA, found in a highly syntenic region in Aspergillus genomes, coordinates a NapA mediated oxidative response in Aspergillus fungi.

摘要

背景

化学诱变筛选有助于鉴定参与感兴趣生物学过程的突变体。然而,当使用涉及用DNA文库将突变体转化为野生型表型的方法时,从这类筛选中鉴定突变往往会失败。

结果

在此,我们分析了构巢曲霉化学衍生突变体的Illumina序列,并鉴定出一个编码C2H2转录因子的基因,该转录因子称为RsrA(应激反应调节因子)。RsrA在丝状真菌基因组中保守,在三种曲霉属物种(构巢曲霉、黄曲霉和烟曲霉)中删除该基因后,我们发现了两种保守的表型:对氧化应激的抗性增强和孢子形成过程减少。对于所有物种,rsrA缺失突变体对过氧化氢处理更具抗性。对构巢曲霉中这一特性的深入研究表明,暴露于过氧化氢后,RsrA缺失导致氧化应激代谢组的几个成分整体上调,包括napA和atfA的表达,这两个bZIP转录因子介导对活性氧(ROS)的抗性以及硫氧还蛋白和谷胱甘肽系统中的NapA靶标。将转录数据与对ΔrsrAΔatfA和ΔrsrAΔnapA双突变体的检测相结合表明,RsrA主要通过NapA介导的应激反应途径发挥作用。本文提出了曲霉中RsrA调节ROS反应的模型。

结论

在曲霉基因组高度同线区域发现的RsrA在曲霉属真菌中协调NapA介导的氧化反应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6faa/4252986/d7ad1c5ff3f3/12864_2014_6708_Fig1_HTML.jpg

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