Suppr超能文献

四组分脂质混合物的多尺度建模:相界面的区域组成、尺寸、排列及性质

Multiscale modeling of four-component lipid mixtures: domain composition, size, alignment, and properties of the phase interface.

作者信息

Ackerman David G, Feigenson Gerald W

机构信息

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, United States.

出版信息

J Phys Chem B. 2015 Mar 19;119(11):4240-50. doi: 10.1021/jp511083z. Epub 2015 Jan 22.

Abstract

Simplified lipid mixtures are often used to model the complex behavior of the cell plasma membrane. Indeed, as few as four components-a high-melting lipid, a nandomain-inducing low-melting lipid, a macrodomain-inducing low-melting lipid, and cholesterol (chol)-can give rise to a wide range of domain sizes and patterns that are highly sensitive to lipid compositions. Although these systems are studied extensively with experiments, the molecular-level details governing their phase behavior are not yet known. We address this issue by using molecular dynamics simulations to analyze how phase separation evolves in a four-component system as it transitions from small domains to large domains. To do so, we fix concentrations of the high-melting lipid 16:0,16:0-phosphatidylcholine (DPPC) and chol, and incrementally replace the nanodomain-inducing low-melting lipid 16:0,18:2-PC (PUPC) by the macrodomain-inducing low-melting lipid 18:2,18:2-PC (DUPC). Coarse-grained simulations of this four-component system reveal that lipid demixing increases as the amount of DUPC increases. Additionally, we find that domain size and interleaflet alignment change sharply over a narrow range of replacement of PUPC by DUPC, indicating that intraleaflet and interleaflet behaviors are coupled. Corresponding united atom simulations show that only lipids within ∼2 nm of the phase interface are significantly perturbed regardless of domain composition or size. Thus, whereas the fraction of interface-perturbed lipids is negligible for large domains, it is significant for smaller ones. Together, these results reveal characteristic traits of bilayer thermodynamic behavior in four-component mixtures, and provide a baseline for investigation of the effects of proteins and other lipids on membrane phase properties.

摘要

简化的脂质混合物常被用于模拟细胞质膜的复杂行为。实际上,仅四种成分——一种高熔点脂质、一种诱导纳米域的低熔点脂质、一种诱导大域的低熔点脂质和胆固醇(Chol)——就能产生对脂质组成高度敏感的广泛的域大小和模式。尽管这些系统已通过实验进行了广泛研究,但其相行为的分子水平细节仍不清楚。我们通过使用分子动力学模拟来分析四组分系统从小域到大域转变过程中相分离是如何演变的,从而解决这个问题。为此,我们固定高熔点脂质16:0,16:0 - 磷脂酰胆碱(DPPC)和Chol的浓度,并逐步用诱导大域的低熔点脂质18:2,18:2 - PC(DUPC)替代诱导纳米域的低熔点脂质16:0,18:2 - PC(PUPC)。对这个四组分系统的粗粒度模拟表明,随着DUPC含量的增加,脂质分离增加。此外,我们发现,在DUPC替代PUPC的狭窄范围内,域大小和层间排列会急剧变化,这表明层内和层间行为是相互关联的。相应的全原子模拟表明,无论域组成或大小如何,只有在相界面约2纳米范围内的脂质会受到显著扰动。因此,对于大域来说,界面受扰脂质的比例可以忽略不计,而对于小域来说则很显著。总之,这些结果揭示了四组分混合物中双层热力学行为的特征,并为研究蛋白质和其他脂质对膜相性质的影响提供了基线。

相似文献

10
The importance of membrane defects-lessons from simulations.膜缺陷的重要性:模拟研究的启示。
Acc Chem Res. 2014 Aug 19;47(8):2244-51. doi: 10.1021/ar4002729. Epub 2014 Jun 3.

引用本文的文献

1
CHARMM-GUI : Past, Current, and Future Developments and Applications.CHARMM-GUI:过去、现在和未来的发展与应用。
J Chem Theory Comput. 2023 Apr 25;19(8):2161-2185. doi: 10.1021/acs.jctc.2c01246. Epub 2023 Apr 4.
7
Lipid Rafts: Controversies Resolved, Mysteries Remain.脂筏:争议解决,谜团犹存。
Trends Cell Biol. 2020 May;30(5):341-353. doi: 10.1016/j.tcb.2020.01.009. Epub 2020 Feb 20.

本文引用的文献

6
Lipid organization of the plasma membrane.质膜的脂质组织。
J Am Chem Soc. 2014 Oct 15;136(41):14554-9. doi: 10.1021/ja507832e. Epub 2014 Oct 1.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验