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由环境定义的增强子群体调节组织驻留巨噬细胞的多样性。

Environmentally-defined enhancer populations regulate diversity of tissue-resident macrophages.

作者信息

Bulger Michael, Palis James

机构信息

Center for Pediatric Biomedical Research, Department of Pediatrics, University of Rochester, Rochester, NY, USA.

Center for Pediatric Biomedical Research, Department of Pediatrics, University of Rochester, Rochester, NY, USA.

出版信息

Trends Immunol. 2015 Feb;36(2):61-2. doi: 10.1016/j.it.2014.12.002. Epub 2015 Jan 7.

DOI:10.1016/j.it.2014.12.002
PMID:25575465
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4322767/
Abstract

Macrophages represent a class of cells specialized for phagocytosis that occurs in multiple, phenotypically distinct populations throughout the body. Two studies published in Cell demonstrate that these phenotypic differences reflect drastic differences in the populations of enhancers that regulate transcription, and that this epigenomic diversity is, in fact, highly plastic and sensitive to environmental cues.

摘要

巨噬细胞是一类专门用于吞噬作用的细胞,在全身多个表型不同的群体中都有存在。发表在《细胞》杂志上的两项研究表明,这些表型差异反映了调节转录的增强子群体的巨大差异,而且这种表观基因组多样性实际上具有高度可塑性,并且对环境线索敏感。

相似文献

1
Environmentally-defined enhancer populations regulate diversity of tissue-resident macrophages.由环境定义的增强子群体调节组织驻留巨噬细胞的多样性。
Trends Immunol. 2015 Feb;36(2):61-2. doi: 10.1016/j.it.2014.12.002. Epub 2015 Jan 7.
2
Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.组织驻留巨噬细胞增强子景观由局部微环境塑造。
Cell. 2014 Dec 4;159(6):1312-26. doi: 10.1016/j.cell.2014.11.018.
3
Mechanisms Underlying the Selection and Function of Macrophage-Specific Enhancers.巨噬细胞特异性增强子的选择与功能的潜在机制
Cold Spring Harb Symp Quant Biol. 2015;80:213-21. doi: 10.1101/sqb.2015.80.027367. Epub 2015 Nov 18.
4
Epigenomics of macrophages.巨噬细胞的表观基因组学
Immunol Rev. 2014 Nov;262(1):96-112. doi: 10.1111/imr.12213.
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The role of chromatin dynamics in immune cell development.染色质动力学在免疫细胞发育中的作用。
Immunol Rev. 2014 Sep;261(1):9-22. doi: 10.1111/imr.12200.
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Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers.染色质蛋白质组学揭示了标记巨噬细胞增强子不同亚群的新型组合组蛋白修饰特征。
Nucleic Acids Res. 2017 Dec 1;45(21):12195-12213. doi: 10.1093/nar/gkx821.
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TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.TP53与基因组的相互作用通过先驱因子活性在不同的局部染色质环境中发生。
Genome Res. 2015 Feb;25(2):179-88. doi: 10.1101/gr.181883.114. Epub 2014 Nov 12.
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Large-scale identification of coregulated enhancer networks in the adult human brain.成人大脑中共同调控的增强子网络的大规模鉴定。
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Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states.用于基于染色质状态比较组织/细胞类型的表观基因组重叠度量(EPOM)。
BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):10. doi: 10.1186/s12864-015-2303-9.
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Transcriptional enhancers: Transcription, function and flexibility.转录增强子:转录、功能与灵活性
Transcription. 2016;7(1):26-31. doi: 10.1080/21541264.2015.1128517.

引用本文的文献

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Epigenetic Regulation of Monocyte and Macrophage Function.单核细胞和巨噬细胞功能的表观遗传调控
Antioxid Redox Signal. 2016 Nov 10;25(14):758-774. doi: 10.1089/ars.2016.6695. Epub 2016 Apr 25.

本文引用的文献

1
Environment drives selection and function of enhancers controlling tissue-specific macrophage identities.环境驱动着控制组织特异性巨噬细胞身份的增强子的选择和功能。
Cell. 2014 Dec 4;159(6):1327-40. doi: 10.1016/j.cell.2014.11.023.
2
Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.组织驻留巨噬细胞增强子景观由局部微环境塑造。
Cell. 2014 Dec 4;159(6):1312-26. doi: 10.1016/j.cell.2014.11.018.
3
Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors.组织驻留巨噬细胞起源于卵黄囊衍生的红髓系祖细胞。
Nature. 2015 Feb 26;518(7540):547-51. doi: 10.1038/nature13989. Epub 2014 Dec 3.
4
Gata6 regulates aspartoacylase expression in resident peritoneal macrophages and controls their survival.Gata6 调控驻留腹腔巨噬细胞中的天冬氨酰酶表达并控制其存活。
J Exp Med. 2014 Jul 28;211(8):1525-31. doi: 10.1084/jem.20140570. Epub 2014 Jul 14.
5
Effect of natural genetic variation on enhancer selection and function.自然遗传变异对增强子选择和功能的影响。
Nature. 2013 Nov 28;503(7477):487-92. doi: 10.1038/nature12615. Epub 2013 Oct 13.
6
Tissue-resident macrophages.组织驻留巨噬细胞。
Nat Immunol. 2013 Oct;14(10):986-95. doi: 10.1038/ni.2705. Epub 2013 Sep 18.
7
Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages.小鼠组织巨噬细胞的特征和多样性所依赖的基因表达谱和转录调控途径。
Nat Immunol. 2012 Nov;13(11):1118-28. doi: 10.1038/ni.2419. Epub 2012 Sep 30.
8
A lineage of myeloid cells independent of Myb and hematopoietic stem cells.不依赖 Myb 和造血干细胞的髓系细胞谱系。
Science. 2012 Apr 6;336(6077):86-90. doi: 10.1126/science.1219179. Epub 2012 Mar 22.
9
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.转录因子的简单组合为巨噬细胞和 B 细胞特性所需的顺式调控元件提供了启动条件。
Mol Cell. 2010 May 28;38(4):576-89. doi: 10.1016/j.molcel.2010.05.004.
10
Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages.鉴定和表征控制巨噬细胞炎症基因表达程序的增强子。
Immunity. 2010 Mar 26;32(3):317-28. doi: 10.1016/j.immuni.2010.02.008. Epub 2010 Mar 4.