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水稻类Mutator元件在酿酒酵母中的转座。

Transposition of a rice Mutator-like element in the yeast Saccharomyces cerevisiae.

作者信息

Zhao Dongyan, Ferguson Ann, Jiang Ning

机构信息

Department of Horticulture, Michigan State University, East Lansing, Michigan 48824.

Department of Horticulture, Michigan State University, East Lansing, Michigan 48824

出版信息

Plant Cell. 2015 Jan;27(1):132-48. doi: 10.1105/tpc.114.128488. Epub 2015 Jan 13.

DOI:10.1105/tpc.114.128488
PMID:25587002
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4330571/
Abstract

Mutator-like transposable elements (MULEs) are widespread in plants and are well known for their high transposition activity as well as their ability to duplicate and amplify host gene fragments. Despite their abundance and importance, few active MULEs have been identified. In this study, we demonstrated that a rice (Oryza sativa) MULE, Os3378, is capable of excising and reinserting in yeast (Saccharomyces cerevisiae), suggesting that yeast harbors all the host factors for the transposition of MULEs. The transposition activity induced by the wild-type transposase is low but can be altered by modification of the transposase sequence, including deletion, fusion, and substitution. Particularly, fusion of a fluorescent protein to the transposase enhanced the transposition activity, representing another approach to manipulate transposases. Moreover, we identified a critical region in the transposase where the net charge of the amino acids seems to be important for activity. Finally, transposition efficiency is also influenced by the element and its flanking sequences (i.e., small elements are more competent than their large counterparts). Perfect target site duplication is favorable, but not required, for precise excision. In addition to the potential application in functional genomics, this study provides the foundation for further studies of the transposition mechanism of MULEs.

摘要

类Mutator转座元件(MULEs)在植物中广泛存在,以其高转座活性以及复制和扩增宿主基因片段的能力而闻名。尽管它们数量众多且很重要,但已鉴定出的活性MULEs却很少。在本研究中,我们证明了水稻(Oryza sativa)的一个MULE,即Os3378,能够在酵母(Saccharomyces cerevisiae)中切除并重新插入,这表明酵母中存在MULEs转座所需的所有宿主因子。野生型转座酶诱导的转座活性较低,但可以通过对转座酶序列进行修饰来改变,包括缺失、融合和替换。特别是,将荧光蛋白与转座酶融合可增强转座活性,这代表了另一种操纵转座酶的方法。此外,我们在转座酶中鉴定出一个关键区域,其中氨基酸的净电荷似乎对活性很重要。最后,转座效率也受元件及其侧翼序列的影响(即小元件比大元件更具转座能力)。完美的靶位点重复有利于精确切除,但不是必需的。除了在功能基因组学中的潜在应用外,本研究为进一步研究MULEs的转座机制奠定了基础。

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本文引用的文献

1
TED, an autonomous and rare maize transposon of the mutator superfamily with a high gametophytic excision frequency.TED是突变体超家族中一种自主且罕见的玉米转座子,具有较高的配子体切除频率。
Plant Cell. 2013 Sep;25(9):3251-65. doi: 10.1105/tpc.113.116517. Epub 2013 Sep 13.
2
Selective acquisition and retention of genomic sequences by Pack-Mutator-like elements based on guanine-cytosine content and the breadth of expression.基于鸟嘌呤-胞嘧啶含量和表达范围,由 Pack-Mutator-like 元件进行基因组序列的选择性获取和保留。
Plant Physiol. 2013 Nov;163(3):1419-32. doi: 10.1104/pp.113.223271. Epub 2013 Sep 12.
3
The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments.转座元件对真核生物基因组的影响:从基因组大小增加到遗传适应压力环境。
Gene. 2012 Nov 1;509(1):7-15. doi: 10.1016/j.gene.2012.07.042. Epub 2012 Aug 16.
4
A hyperactive transposase of the maize transposable element activator (Ac).玉米转座子激活因子(Ac)的一种活性转座酶。
Genetics. 2012 Jul;191(3):747-56. doi: 10.1534/genetics.112.139642. Epub 2012 May 4.
5
Mutator-like elements with multiple long terminal inverted repeats in plants.植物中具有多个长末端反向重复序列的类转座子元件。
Comp Funct Genomics. 2012;2012:695827. doi: 10.1155/2012/695827. Epub 2012 Mar 8.
6
Identification of an active new mutator transposable element in maize.鉴定玉米中一个活跃的新型突变转座元件。
G3 (Bethesda). 2011 Sep;1(4):293-302. doi: 10.1534/g3.111.000398. Epub 2011 Sep 1.
7
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8
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9
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10
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Adv Drug Deliv Rev. 2010 Sep 30;62(12):1187-95. doi: 10.1016/j.addr.2010.06.006. Epub 2010 Jul 6.