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水稻微型反向重复转座元件mPing在拟南芥中的转座

Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana.

作者信息

Yang Guojun, Zhang Feng, Hancock C Nathan, Wessler Susan R

机构信息

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 Jun 26;104(26):10962-7. doi: 10.1073/pnas.0702080104. Epub 2007 Jun 19.

Abstract

An active miniature inverted repeat transposable element (MITE), mPing, was discovered by computer-assisted analysis of rice genome sequence. The mPing element is mobile in rice cell culture and in a few rice strains where it has been amplified to >1,000 copies during recent domestication. However, determination of the transposase source and characterization of the mechanism of transposition have been hampered by the high copy number of mPing and the presence of several candidate autonomous elements in the rice genome. Here, we report that mPing is active in Arabidopsis thaliana, where its transposition is catalyzed by three sources of transposase from rice: the autonomous Ping and Pong elements and by a cDNA derived from a Ping transcript. In addition to transposase, the product of a second element-encoded ORF of unknown function is also required for mPing transposition. Excision of mPing in A. thaliana is usually precise, and transposed copies usually insert into unlinked sites in the genome that are preferentially in or near genes. As such, this will be a valuable assay system for the dissection of MITE transposition and a potentially powerful tagging system for gene discovery in eukaryotes.

摘要

通过对水稻基因组序列进行计算机辅助分析,发现了一种活跃的微型反向重复转座元件(MITE)——mPing。mPing元件在水稻细胞培养物以及一些水稻品系中具有移动性,在最近的驯化过程中,它在这些品系中扩增到了1000多个拷贝。然而,由于mPing的高拷贝数以及水稻基因组中存在多个候选自主元件,转座酶来源的确定和转座机制的表征受到了阻碍。在此,我们报道mPing在拟南芥中是活跃的,其转座由来自水稻的三种转座酶来源催化:自主的Ping和Pong元件以及来自Ping转录本的cDNA。除了转座酶外,mPing转座还需要第二个元件编码的功能未知的开放阅读框的产物。mPing在拟南芥中的切除通常是精确的,转座拷贝通常插入到基因组中不连锁的位点,这些位点优先位于基因内或基因附近。因此,这将是一个用于剖析MITE转座的有价值的检测系统,也是一个潜在的用于真核生物基因发现的强大标签系统。

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