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Lignin valorization through integrated biological funneling and chemical catalysis.通过集成生物趋化和化学催化实现木质素增值。
Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12013-8. doi: 10.1073/pnas.1410657111. Epub 2014 Aug 4.
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Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.比较 26 个鞘氨醇单胞菌基因组揭示了多样化的环境适应和生物降解能力。
Appl Environ Microbiol. 2013 Jun;79(12):3724-33. doi: 10.1128/AEM.00518-13. Epub 2013 Apr 5.
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Microbial degradation of aromatic compounds - from one strategy to four.微生物降解芳香族化合物——从一种策略到四种策略。
Nat Rev Microbiol. 2011 Oct 3;9(11):803-16. doi: 10.1038/nrmicro2652.
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
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Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds.关于木质素衍生芳香族化合物细菌分解代谢途径的遗传和生化研究。
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GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.基因标记：用于在原核生物、真核生物和病毒中寻找基因的网络软件。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W451-4. doi: 10.1093/nar/gki487.
8
Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment.新鞘氨醇菌属新种五芳烃食新鞘氨醇菌，一种从河口沉积物中分离出的高分子量多环芳烃降解细菌。
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tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
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从日本骏河湾沉没木材中分离出的新鞘氨醇菌属菌株MBES04的基因组序列草图

Draft Genome Sequence of Novosphingobium sp. Strain MBES04, Isolated from Sunken Wood from Suruga Bay, Japan.

作者信息

Ohta Yukari, Nishi Shinro, Kobayashi Kiwa, Tsubouchi Taishi, Iida Kagami, Tanizaki Akiko, Kurosawa Kanako, Adachi Akiko, Nishihara Mizue, Sato Reona, Hasegawa Ryoichi, Hatada Yuji

机构信息

Japan Agency for Marine-Earth Science and Technology, Yokosuka-shi, Kanagawa, Japan.

Japan Agency for Marine-Earth Science and Technology, Yokosuka-shi, Kanagawa, Japan

出版信息

Genome Announc. 2015 Jan 15;3(1):e01373-14. doi: 10.1128/genomeA.01373-14.

DOI:10.1128/genomeA.01373-14
PMID:25593249
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4299891/
Abstract

This report describes the draft genome sequence of Novosphingobium sp. strain MBES04, isolated from sunken wood from Suruga Bay, Japan, which is capable of degrading a wide range of lignin-related aromatic monomers. The draft genome sequence contains 5,361,448 bp, with a G+C content of 65.4%.

摘要

本报告描述了从日本骏河湾沉没木材中分离出的新鞘氨醇菌属MBES04菌株的基因组序列草图，该菌株能够降解多种与木质素相关的芳香单体。基因组序列草图包含5,361,448个碱基对，G+C含量为65.4%。