Lazorthes Sandra, Vallot Céline, Briois Sébastien, Aguirrebengoa Marion, Thuret Jean-Yves, St Laurent Georges, Rougeulle Claire, Kapranov Philipp, Mann Carl, Trouche Didier, Nicolas Estelle
1] Université de Toulouse; UPS; LBCMCP; F-31062 Toulouse, France [2] CNRS; LBCMCP; F-31062 Toulouse, France.
UMR 7216, Université Paris Diderot, 75205 Paris, France.
Nat Commun. 2015 Jan 20;6:5971. doi: 10.1038/ncomms6971.
Non-coding RNAs (ncRNAs) play major roles in proper chromatin organization and function. Senescence, a strong anti-proliferative process and a major anticancer barrier, is associated with dramatic chromatin reorganization in heterochromatin foci. Here we analyze strand-specific transcriptome changes during oncogene-induced human senescence. Strikingly, while differentially expressed RNAs are mostly repressed during senescence, ncRNAs belonging to the recently described vlincRNA (very long intergenic ncRNA) class are mainly activated. We show that VAD, a novel antisense vlincRNA strongly induced during senescence, is required for the maintenance of senescence features. VAD modulates chromatin structure in cis and activates gene expression in trans at the INK4 locus, which encodes cell cycle inhibitors important for senescence-associated cell proliferation arrest. Importantly, VAD inhibits the incorporation of the repressive histone variant H2A.Z at INK4 gene promoters in senescent cells. Our data underline the importance of vlincRNAs as sensors of cellular environment changes and as mediators of the correct transcriptional response.
非编码RNA(ncRNAs)在染色质的正常组织和功能中发挥着重要作用。衰老作为一种强大的抗增殖过程和主要的抗癌屏障,与异染色质区域显著的染色质重组相关。在此,我们分析了癌基因诱导的人类衰老过程中链特异性转录组的变化。令人惊讶的是,虽然差异表达的RNA在衰老过程中大多受到抑制,但属于最近描述的vlincRNA(极长基因间ncRNA)类别的ncRNAs主要被激活。我们发现,VAD是一种在衰老过程中强烈诱导的新型反义vlincRNA,它是维持衰老特征所必需的。VAD在顺式作用中调节染色质结构,并在反式作用中激活INK4位点的基因表达,INK4位点编码对衰老相关细胞增殖停滞很重要的细胞周期抑制剂。重要的是,VAD抑制衰老细胞中INK4基因启动子处抑制性组蛋白变体H2A.Z的掺入。我们的数据强调了vlincRNAs作为细胞环境变化传感器和正确转录反应介导者的重要性。