Kommoju Uma Jyothi, Maruda Jayaraj, Kadarkarai Subburaj, Irgam Kumuda, Kotla Jaya Prasad, Velaga Lakshmi, Mohan Reddy Battini
Molecular Anthropology Group, Biological Anthropology Unit, Indian Statistical Institute, Hyderabad, India.
JP Endocrine Center, Ashok Nagar, Hyderabad, India.
Meta Gene. 2013 Oct 15;1:15-23. doi: 10.1016/j.mgene.2013.09.003. eCollection 2013 Dec.
Genome-wide association studies identified novel genes associated with T2DM which have been replicated in different populations. We try to examine here if certain frequently replicated SNPs of Insulin growth factor 2 m-RNA binding protein 2 (IGF2BP2) (rs4402960, rs1470579) and Solute Carrier family 30 member 8 (SLC30A8) (rs13266634) genes, known to be implicated in insulin pathway, are associated with T2DM in the population of Hyderabad, which is considered to be a diabetic capital of India. Genotyping of the 1379 samples, 758 cases and 621 controls, for the SNPs was performed on sequenom massarray platform. The logistic regression analysis was done using SPSS software and the post-hoc power of the study was estimated using G power. The allele and genotype frequencies were similar between cases and controls, both for SNPs of IGF2BP2 and SLC30A8 genes. Logistic regression did not reveal significant allelic or genotypic association of any of the three SNPs with T2DM. Despite large sample size and adequate power, we could not replicate the association of IGF2BP2 and SLC30A8 SNPs with T2DM in our sample from Hyderabad (A.P.), India, albeit another study based on much larger sample but from heterogeneous populations from the northern parts of India showed significant association of two of the above 3 SNPs, suggesting variable nature of susceptibility of these genes in different ethnic groups. Although the IGF2BP2 and SLC30A8 genes are important in the functional pathway of Insulin secretion, it appears that these genes do not play a significant role in the susceptibility to T2DM in this population.
全基因组关联研究确定了与2型糖尿病相关的新基因,这些基因已在不同人群中得到验证。我们在此尝试研究胰岛素样生长因子2信使核糖核酸结合蛋白2(IGF2BP2)(rs4402960、rs1470579)和溶质载体家族30成员8(SLC30A8)(rs13266634)基因的某些频繁重复的单核苷酸多态性(SNP)是否与海得拉巴人群中的2型糖尿病相关,海得拉巴被认为是印度的糖尿病之都。在Sequenom质谱阵列平台上对1379个样本(758例病例和621例对照)进行了这些SNP的基因分型。使用SPSS软件进行逻辑回归分析,并使用G power估计研究的事后检验效能。IGF2BP2和SLC30A8基因的SNP在病例组和对照组之间的等位基因和基因型频率相似。逻辑回归未显示这三个SNP中的任何一个与2型糖尿病有显著的等位基因或基因型关联。尽管样本量很大且效能充足,但我们无法在来自印度安得拉邦海得拉巴的样本中重复IGF2BP2和SLC30A8 SNP与2型糖尿病的关联,尽管另一项基于更大样本但来自印度北部异质人群的研究显示上述3个SNP中的2个有显著关联,这表明这些基因在不同种族群体中的易感性具有可变性质。尽管IGF2BP2和SLC30A8基因在胰岛素分泌的功能途径中很重要,但在该人群中,这些基因似乎在2型糖尿病易感性中不起重要作用。