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一种用于识别国际保护鲨鱼物种加工鱼鳍的新型微型DNA条形码检测方法。

A novel mini-DNA barcoding assay to identify processed fins from internationally protected shark species.

作者信息

Fields Andrew T, Abercrombie Debra L, Eng Rowena, Feldheim Kevin, Chapman Demian D

机构信息

School of Marine and Atmospheric Science, Stony Brook University, Stony Brook, New York, 11794, United States of America.

Abercrombie & Fish, Miller Place, New York, 11764, United States of America.

出版信息

PLoS One. 2015 Feb 3;10(2):e0114844. doi: 10.1371/journal.pone.0114844. eCollection 2015.

Abstract

There is a growing need to identify shark products in trade, in part due to the recent listing of five commercially important species on the Appendices of the Convention on International Trade in Endangered Species (CITES; porbeagle, Lamna nasus, oceanic whitetip, Carcharhinus longimanus scalloped hammerhead, Sphyrna lewini, smooth hammerhead, S. zygaena and great hammerhead S. mokarran) in addition to three species listed in the early part of this century (whale, Rhincodon typus, basking, Cetorhinus maximus, and white, Carcharodon carcharias). Shark fins are traded internationally to supply the Asian dried seafood market, in which they are used to make the luxury dish shark fin soup. Shark fins usually enter international trade with their skin still intact and can be identified using morphological characters or standard DNA-barcoding approaches. Once they reach Asia and are traded in this region the skin is removed and they are treated with chemicals that eliminate many key diagnostic characters and degrade their DNA ("processed fins"). Here, we present a validated mini-barcode assay based on partial sequences of the cytochrome oxidase I gene that can reliably identify the processed fins of seven of the eight CITES listed shark species. We also demonstrate that the assay can even frequently identify the species or genus of origin of shark fin soup (31 out of 50 samples).

摘要

识别贸易中的鲨鱼产品的需求日益增长,部分原因是最近有五种具有商业重要性的物种被列入《濒危野生动植物种国际贸易公约》(CITES)附录(鼠鲨,鼠鲨属;远洋白鳍鲨,长鳍真鲨;扇形锤头鲨,路氏双髻鲨;无沟双髻鲨,无沟双髻鲨属;以及大锤头鲨,路氏双髻鲨),此外还有三种在本世纪初就已被列入的物种(鲸鲨,鲸鲨属;姥鲨,姥鲨属;以及大白鲨,噬人鲨属)。鲨鱼鳍在国际上进行交易,以供应亚洲的干海鲜市场,在这个市场中,它们被用来制作高档菜肴鱼翅汤。鲨鱼鳍通常在其皮肤仍完好无损的情况下进入国际贸易,并且可以通过形态特征或标准的DNA条形码方法进行识别。一旦它们抵达亚洲并在该地区进行交易,其皮肤就会被去除,并且会用化学物质进行处理,这些化学物质会消除许多关键的诊断特征并降解其DNA(“加工过的鱼鳍”)。在此,我们提出了一种基于细胞色素氧化酶I基因部分序列的经过验证的微型条形码检测方法,该方法能够可靠地识别八种CITES所列鲨鱼物种中七种的加工过的鱼鳍。我们还证明,该检测方法甚至能够频繁地识别鱼翅汤的物种或起源属(50个样本中有31个)。

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本文引用的文献

1
Taxonomic misidentification in public DNA databases.
New Phytol. 2003 Oct;160(1):4-5. doi: 10.1046/j.1469-8137.2003.00894.x.
2
On the unreliability of published DNA sequences.
New Phytol. 2003 Oct;160(1):43-48. doi: 10.1046/j.1469-8137.2003.00861.x.
3
Identifying sharks with DNA barcodes: assessing the utility of a nucleotide diagnostic approach.
Mol Ecol Resour. 2009 May;9 Suppl s1:243-56. doi: 10.1111/j.1755-0998.2009.02653.x.
4
Patterns and ecosystem consequences of shark declines in the ocean.
Ecol Lett. 2010 Aug 1;13(8):1055-71. doi: 10.1111/j.1461-0248.2010.01489.x. Epub 2010 May 26.
6
Validation of the barcoding gene COI for use in forensic genetic species identification.
Forensic Sci Int. 2007 Nov 15;173(1):1-6. doi: 10.1016/j.forsciint.2006.09.013. Epub 2007 Feb 14.
8
DNA barcoding Australia's fish species.
Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1847-57. doi: 10.1098/rstb.2005.1716.
9
DNA sequence error rates in Genbank records estimated using the mouse genome as a reference.
DNA Seq. 2004 Oct-Dec;15(5-6):362-4. doi: 10.1080/10425170400008972.

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