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来自嗜酒色杆菌的硫代硫酸盐脱氢酶(TsdA):硫代硫酸盐氧化的结构与功能解析

Thiosulfate dehydrogenase (TsdA) from Allochromatium vinosum: structural and functional insights into thiosulfate oxidation.

作者信息

Brito José A, Denkmann Kevin, Pereira Inês A C, Archer Margarida, Dahl Christiane

机构信息

From the Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-UNL), Avenida da República, 2780-157 Oeiras, Portugal and.

the Institut für Mikrobiologie & Biotechnologie, Rheinische Friedrich-Wilhelms-Universität Bonn, D-53115 Bonn, Germany.

出版信息

J Biol Chem. 2015 Apr 3;290(14):9222-38. doi: 10.1074/jbc.M114.623397. Epub 2015 Feb 11.

Abstract

Although the oxidative condensation of two thiosulfate anions to tetrathionate constitutes a well documented and significant part of the natural sulfur cycle, little is known about the enzymes catalyzing this reaction. In the purple sulfur bacterium Allochromatium vinosum, the reaction is catalyzed by the periplasmic diheme c-type cytochrome thiosulfate dehydrogenase (TsdA). Here, we report the crystal structure of the "as isolated" form of A. vinosum TsdA to 1.98 Å resolution and those of several redox states of the enzyme to different resolutions. The protein contains two typical class I c-type cytochrome domains wrapped around two hemes axially coordinated by His(53)/Cys(96) and His(164)/Lys(208). These domains are very similar, suggesting a gene duplication event during evolution. A ligand switch from Lys(208) to Met(209) is observed upon reduction of the enzyme. Cys(96) is an essential residue for catalysis, with the specific activity of the enzyme being completely abolished in several TsdA-Cys(96) variants. TsdA-K208N, K208G, and M209G variants were catalytically active in thiosulfate oxidation as well as in tetrathionate reduction, pointing to heme 2 as the electron exit point. In this study, we provide spectroscopic and structural evidence that the TsdA reaction cycle involves the transient presence of heme 1 in the high-spin state caused by movement of the Sγ atom of Cys(96) out of the iron coordination sphere. Based on the presented data, we draw important conclusions about the enzyme and propose a possible reaction mechanism for TsdA.

摘要

尽管两个硫代硫酸根阴离子氧化缩合形成连四硫酸根是自然硫循环中有充分文献记载的重要组成部分,但对于催化该反应的酶却知之甚少。在紫色硫细菌嗜酒全色菌中,该反应由周质双血红素c型细胞色素硫代硫酸盐脱氢酶(TsdA)催化。在此,我们报道了嗜酒全色菌TsdA“原样分离”形式的晶体结构,分辨率为1.98 Å,以及该酶几种氧化还原状态的不同分辨率结构。该蛋白质包含两个典型的I类c型细胞色素结构域,围绕着由His(53)/Cys(96)和His(164)/Lys(208)轴向配位的两个血红素。这些结构域非常相似,表明在进化过程中发生了基因复制事件。酶还原后观察到配体从Lys(208)切换到Met(209)。Cys(96)是催化的必需残基,在几种TsdA-Cys(96)变体中酶的比活性完全丧失。TsdA-K208N、K208G和M209G变体在硫代硫酸盐氧化以及连四硫酸盐还原中具有催化活性,表明血红素2是电子出口点。在本研究中,我们提供了光谱和结构证据,证明TsdA反应循环涉及由于Cys(96)的Sγ原子移出铁配位球而导致血红素1短暂处于高自旋状态。基于所呈现的数据,我们对该酶得出了重要结论,并提出了TsdA可能的反应机制。

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