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使用数字PCR和实时PCR对三种市售巨细胞病毒定量标准品进行比较评估。

Comparative evaluation of three commercial quantitative cytomegalovirus standards by use of digital and real-time PCR.

作者信息

Hayden R T, Gu Z, Sam S S, Sun Y, Tang L, Pounds S, Caliendo A M

机构信息

Department of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA

Department of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.

出版信息

J Clin Microbiol. 2015 May;53(5):1500-5. doi: 10.1128/JCM.03375-14. Epub 2015 Feb 18.

Abstract

The recent development of the 1st WHO International Standard for human cytomegalovirus (CMV) and the introduction of commercially produced secondary standards have raised hopes of improved agreement among laboratories performing quantitative PCR for CMV. However, data to evaluate the trueness and uniformity of secondary standards and the consistency of results achieved when these materials are run on various assays are lacking. Three concentrations of each of the three commercially prepared secondary CMV standards were tested in quadruplicate by three real-time and two digital PCR methods. The mean results were compared in a pairwise fashion with nominal values provided by each manufacturer. The agreement of results among all methods for each sample and for like concentrations of each standard was also assessed. The relationship between the nominal values of standards and the measured values varied, depending upon the assay used and the manufacturer of the standards, with the degree of bias ranging from +0.6 to -1.0 log10 IU/ml. The mean digital PCR result differed significantly among the secondary standards, as did the results of the real-time PCRs, particularly when plotted against nominal log10 IU values. Commercially available quantitative secondary CMV standards produce variable results when tested by different real-time and digital PCR assays, with various magnitudes of bias compared to nominal values. These findings suggest that the use of such materials may not achieve the intended uniformity among laboratories measuring CMV viral load, as envisioned by adaptation of the WHO standard.

摘要

世界卫生组织(WHO)首个人类巨细胞病毒(CMV)国际标准品的最新研制以及商业生产的二级标准品的推出,让人们对开展CMV定量PCR检测的各实验室间能有更高的一致性抱有期待。然而,目前尚缺乏数据来评估二级标准品的准确性和均匀性,以及这些材料在各种检测方法中运行时所获得结果的一致性。对三种商业制备的CMV二级标准品的三种浓度分别进行了一式四份的检测,采用了三种实时PCR方法和两种数字PCR方法。将平均结果与各制造商提供的标称值进行两两比较。还评估了每种样品以及每种标准品相同浓度下所有方法之间结果的一致性。标准品的标称值与测量值之间的关系各不相同,这取决于所使用的检测方法和标准品的制造商,偏差程度在+0.6至 -1.0 log10 IU/ml之间。二级标准品之间的平均数字PCR结果差异显著,实时PCR结果也是如此,尤其是在与标称log10 IU值作图时。市售的CMV定量二级标准品在通过不同的实时PCR和数字PCR检测方法进行测试时,会产生不同的结果,与标称值相比存在不同程度的偏差。这些发现表明,使用这类材料可能无法在世卫组织标准适用的情况下,实现各测量CMV病毒载量的实验室之间预期的一致性。

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本文引用的文献

2
Commutability: a peculiar property of calibration and control materials. Definition and evaluation.
Clin Chem Lab Med. 2013 Aug;51(8):e167-8. doi: 10.1515/cclm-2013-0065.
3
Standard reference material 2366 for measurement of human cytomegalovirus DNA.
J Mol Diagn. 2013 Mar;15(2):177-85. doi: 10.1016/j.jmoldx.2012.09.007. Epub 2013 Jan 12.
4
Viral diagnostics in the era of digital polymerase chain reaction.
Diagn Microbiol Infect Dis. 2013 Jan;75(1):1-4. doi: 10.1016/j.diagmicrobio.2012.10.009. Epub 2012 Nov 20.
5
An international multicenter performance analysis of cytomegalovirus load tests.
Clin Infect Dis. 2013 Feb;56(3):367-73. doi: 10.1093/cid/cis900. Epub 2012 Oct 24.
6
Factors contributing to variability of quantitative viral PCR results in proficiency testing samples: a multivariate analysis.
J Clin Microbiol. 2012 Feb;50(2):337-45. doi: 10.1128/JCM.01287-11. Epub 2011 Nov 23.
7
High-throughput droplet digital PCR system for absolute quantitation of DNA copy number.
Anal Chem. 2011 Nov 15;83(22):8604-10. doi: 10.1021/ac202028g. Epub 2011 Oct 28.
9
Molecular monitoring of viral infections after hematopoietic stem cell transplantation.
Int J Hematol. 2010 May;91(4):596-601. doi: 10.1007/s12185-010-0570-4. Epub 2010 Apr 23.
10
EBV viral load detection in clinical virology.
J Clin Virol. 2010 Jun;48(2):82-90. doi: 10.1016/j.jcv.2010.03.016. Epub 2010 Apr 14.

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