• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

最小生成树中的层次聚类。

Hierarchical clustering in minimum spanning trees.

作者信息

Yu Meichen, Hillebrand Arjan, Tewarie Prejaas, Meier Jil, van Dijk Bob, Van Mieghem Piet, Stam Cornelis Jan

机构信息

Department of Clinical Neurophysiology and MEG Center, VU University Medical Center, PO Box 1081 HV, Amsterdam, The Netherlands.

Department of Neurology, VU University Medical Center, Amsterdam, The Netherlands.

出版信息

Chaos. 2015 Feb;25(2):023107. doi: 10.1063/1.4908014.

DOI:10.1063/1.4908014
PMID:25725643
Abstract

The identification of clusters or communities in complex networks is a reappearing problem. The minimum spanning tree (MST), the tree connecting all nodes with minimum total weight, is regarded as an important transport backbone of the original weighted graph. We hypothesize that the clustering of the MST reveals insight in the hierarchical structure of weighted graphs. However, existing theories and algorithms have difficulties to define and identify clusters in trees. Here, we first define clustering in trees and then propose a tree agglomerative hierarchical clustering (TAHC) method for the detection of clusters in MSTs. We then demonstrate that the TAHC method can detect clusters in artificial trees, and also in MSTs of weighted social networks, for which the clusters are in agreement with the previously reported clusters of the original weighted networks. Our results therefore not only indicate that clusters can be found in MSTs, but also that the MSTs contain information about the underlying clusters of the original weighted network.

摘要

在复杂网络中识别聚类或群落是一个反复出现的问题。最小生成树(MST),即连接所有节点且总权重最小的树,被视为原始加权图的重要传输骨干。我们假设最小生成树的聚类揭示了加权图层次结构的见解。然而,现有理论和算法在定义和识别树中的聚类方面存在困难。在此,我们首先定义树中的聚类,然后提出一种用于检测最小生成树中聚类的树凝聚层次聚类(TAHC)方法。接着,我们证明TAHC方法能够检测人工树中的聚类,以及加权社交网络最小生成树中的聚类,这些聚类与先前报道的原始加权网络中的聚类一致。因此,我们的结果不仅表明可以在最小生成树中找到聚类,还表明最小生成树包含有关原始加权网络潜在聚类的信息。

相似文献

1
Hierarchical clustering in minimum spanning trees.最小生成树中的层次聚类。
Chaos. 2015 Feb;25(2):023107. doi: 10.1063/1.4908014.
2
Parallel clustering algorithm for large data sets with applications in bioinformatics.用于大数据集的并行聚类算法及其在生物信息学中的应用
IEEE/ACM Trans Comput Biol Bioinform. 2009 Apr-Jun;6(2):344-52. doi: 10.1109/TCBB.2007.70272.
3
The minimum spanning tree: an unbiased method for brain network analysis.最小生成树:一种用于脑网络分析的无偏方法。
Neuroimage. 2015 Jan 1;104:177-88. doi: 10.1016/j.neuroimage.2014.10.015. Epub 2014 Oct 16.
4
Functional grouping of similar genes using eigenanalysis on minimum spanning tree based neighborhood graph.基于最小生成树邻域图的特征分析对相似基因进行功能分组。
Comput Biol Med. 2016 Apr 1;71:135-48. doi: 10.1016/j.compbiomed.2016.02.007. Epub 2016 Feb 21.
5
Functional brain network analysis using minimum spanning trees in Multiple Sclerosis: an MEG source-space study.使用最小生成树对多发性硬化症的功能脑网络进行分析:一项基于脑磁图源空间的研究。
Neuroimage. 2014 Mar;88:308-18. doi: 10.1016/j.neuroimage.2013.10.022. Epub 2013 Oct 22.
6
Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis.只见树木不见森林:基于最小生成树(MST)的系统发育分析中最小生成树森林的大小及分支意义
PLoS One. 2015 Mar 23;10(3):e0119315. doi: 10.1371/journal.pone.0119315. eCollection 2015.
7
Minimum spanning trees for gene expression data clustering.用于基因表达数据聚类的最小生成树
Genome Inform. 2001;12:24-33.
8
Theory of minimum spanning trees. I. Mean-field theory and strongly disordered spin-glass model.最小生成树理论。I. 平均场理论与强无序自旋玻璃模型。
Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Feb;81(2 Pt 1):021130. doi: 10.1103/PhysRevE.81.021130. Epub 2010 Feb 25.
9
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees.使用图论方法对基因表达数据进行聚类:最小生成树的应用
Bioinformatics. 2002 Apr;18(4):536-45. doi: 10.1093/bioinformatics/18.4.536.
10
Hierarchical link clustering algorithm in networks.网络中的层次链接聚类算法
Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062814. doi: 10.1103/PhysRevE.91.062814. Epub 2015 Jun 24.

引用本文的文献

1
Longitudinal changes in MEG-based brain network topology of ALS patients with cognitive/behavioral impairment-An exploratory study.伴有认知/行为障碍的肌萎缩侧索硬化症患者基于脑磁图的脑网络拓扑结构的纵向变化——一项探索性研究。
Netw Neurosci. 2025 Jul 17;9(3):824-841. doi: 10.1162/netn_a_00450. eCollection 2025.
2
Network Models of BACE-1 Inhibitors: Exploring Structural and Biochemical Relationships.网络模型研究 BACE-1 抑制剂:探索结构与生化关系。
Int J Mol Sci. 2024 Jun 23;25(13):6890. doi: 10.3390/ijms25136890.
3
Going beyond the DSM in predicting, diagnosing, and treating autism spectrum disorder with covarying alexithymia and OCD: A structural equation model and process-based predictive coding account.
超越《精神疾病诊断与统计手册》,通过共变述情障碍和强迫症来预测、诊断和治疗自闭症谱系障碍:一种结构方程模型和基于过程的预测编码解释。
Front Psychol. 2022 Sep 6;13:993381. doi: 10.3389/fpsyg.2022.993381. eCollection 2022.
4
High-order brain functional network for electroencephalography-based diagnosis of major depressive disorder.基于脑电图的重度抑郁症诊断的高阶脑功能网络
Front Neurosci. 2022 Aug 9;16:976229. doi: 10.3389/fnins.2022.976229. eCollection 2022.
5
Visualization, benchmarking and characterization of nested single-cell heterogeneity as dynamic forest mixtures.嵌套单细胞异质性的可视化、基准测试和特征描述作为动态森林混合物。
Brief Bioinform. 2022 Mar 10;23(2). doi: 10.1093/bib/bbac017.
6
The human connectome in Alzheimer disease - relationship to biomarkers and genetics.阿尔茨海默病的人类连接组学——与生物标志物和遗传学的关系。
Nat Rev Neurol. 2021 Sep;17(9):545-563. doi: 10.1038/s41582-021-00529-1. Epub 2021 Jul 20.
7
Disentangling age- and disease-related alterations in schizophrenia brain network using structural equation modeling: A graph theoretical study based on minimum spanning tree.运用结构方程模型解析精神分裂症脑网络中的年龄和疾病相关改变:基于最小生成树的图论研究。
Hum Brain Mapp. 2021 Jul;42(10):3023-3041. doi: 10.1002/hbm.25403. Epub 2021 May 7.
8
Brain Connectivity and Information-Flow Breakdown Revealed by a Minimum Spanning Tree-Based Analysis of MRI Data in Behavioral Variant Frontotemporal Dementia.基于最小生成树的行为变异型额颞叶痴呆MRI数据分析揭示的脑连接性和信息流中断
Front Neurosci. 2019 Mar 14;13:211. doi: 10.3389/fnins.2019.00211. eCollection 2019.
9
EEG Resting State Functional Connectivity in Adult Dyslexics Using Phase Lag Index and Graph Analysis.使用相位滞后指数和图分析研究成年阅读障碍者的脑电图静息态功能连接性
Front Hum Neurosci. 2018 Aug 30;12:341. doi: 10.3389/fnhum.2018.00341. eCollection 2018.
10
Minimum spanning tree analysis of the human connectome.人类连接组的最小生成树分析。
Hum Brain Mapp. 2018 Jun;39(6):2455-2471. doi: 10.1002/hbm.24014. Epub 2018 Feb 21.