Lucena-Padrós Helena, González Juan M, Caballero-Guerrero Belén, Luis Ruiz-Barba José, Maldonado-Barragán Antonio
Departamento de Biotecnología de Alimentos, Instituto de la Grasa, Consejo Superior de Investigaciones Científicas (CSIC), Campus Universitario Pablo de Olavide, Edificio 46; Carretera de Utrera, Km 1 41013 Sevilla, Spain.
Instituto de Recursos Naturales y Agrobiología, Consejo Superior de Investigaciones Científicas (CSIC), P.O. Box 1052, 41080 Sevilla, Spain.
Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):1895-1901. doi: 10.1099/ijs.0.000196. Epub 2015 Mar 19.
Three isolates originating from Spanish-style green-olive fermentations in a manufacturing company in the province of Seville, Spain, were taxonomically characterized by a polyphasic approach. This included a phylogenetic analysis based on 16S rRNA gene sequences and multi-locus sequence analysis (MLSA) based on pyrH, recA, rpoA, gyrB and mreB genes. The isolates shared 98.0 % 16S rRNA gene sequence similarity with Vibrio xiamenensis G21T. Phylogenetic analysis based on 16S rRNA gene sequences using the neighbour-joining and maximum-likelihood methods showed that the isolates fell within the genus Vibrio and formed an independent branch close to V. xiamenensis G21T. The maximum-parsimony method grouped the isolates to V. xiamenensis G21T but forming two clearly separated branches. Phylogenetic trees based on individual pyrH, recA, rpoA, gyrB and mreB gene sequences revealed that strain IGJ1.11T formed a clade alone or with V. xiamenensis G21T. Sequence similarities of the pyrH, recA, rpoA, gyrB and mreB genes between strain IGJ1.11T and V. xiamenensis G21T were 86.7, 85.7, 97.3, 87.6 and 84.8 %, respectively. MLSA of concatenated sequences showed that strain IGJ1.11T and V. xiamenensis G21T are two clearly separated species that form a clade, which we named Clade Xiamenensis, that presented 89.7 % concatenated gene sequence similarity, i.e. less than 92 %. The major cellular fatty acids (>5 %) of strain IGJ1.11T were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16 : 0 and summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). Enzymic activity profiles, sugar fermentation patterns and DNA G+C content (52.9 mol%) differentiated the novel strains from the closest related members of the genus Vibrio. The name Vibrio olivae sp. nov. is proposed for the novel species. The type strain is IGJ1.11T ( = CECT 8064T = DSM 25438T).
从西班牙塞维利亚省一家制造公司的西班牙式绿橄榄发酵物中分离出的三株菌株,采用多相分类法进行了分类鉴定。这包括基于16S rRNA基因序列的系统发育分析以及基于pyrH、recA、rpoA、gyrB和mreB基因的多位点序列分析(MLSA)。这些分离株与厦门弧菌G21T的16S rRNA基因序列相似度为98.0%。使用邻接法和最大似然法基于16S rRNA基因序列进行的系统发育分析表明,这些分离株属于弧菌属,并形成了一个靠近厦门弧菌G21T的独立分支。最大简约法将这些分离株归为厦门弧菌G21T,但形成了两个明显分开的分支。基于单个pyrH、recA、rpoA、gyrB和mreB基因序列的系统发育树显示,菌株IGJ1.11T单独或与厦门弧菌G21T形成一个进化枝。菌株IGJ1.11T与厦门弧菌G21T之间pyrH、recA、rpoA、gyrB和mreB基因的序列相似度分别为86.7%、85.7%、97.3%、87.6%和84.8%。串联序列的MLSA表明,菌株IGJ1.11T和厦门弧菌G21T是两个明显分开的物种,它们形成了一个进化枝,我们将其命名为厦门进化枝,该进化枝的串联基因序列相似度为89.7%,即低于92%。菌株IGJ1.11T的主要细胞脂肪酸(>5%)为特征性总和3(C16 : 1ω7c和/或C16 : 1ω6c)、C16 : 0和特征性总和8(C18 : 1ω7c和/或C18 : 1ω6c)。酶活性谱、糖发酵模式和DNA G+C含量(52.9 mol%)将这些新菌株与弧菌属最密切相关的成员区分开来。建议将新物种命名为橄榄弧菌(Vibrio olivae sp. nov.)。模式菌株为IGJ1.11T(= CECT 8064T = DSM 25438T)。